BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027839
         (589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   264   7e-69
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi...   264   7e-69
ref|NP_177262.1| pentatricopeptide repeat-containing protein [Ar...   260   1e-67
ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|2...   260   1e-67
ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi...   259   2e-67

>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  264 bits (675), Expect = 7e-69
 Identities = 122/196 (62%), Positives = 168/196 (85%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETFGLIMRRYARCRKTKEAIE 409
           +KHT ESYN LIEALGKIKQFN IW++V +MK KG++++ETF LI RRYAR RK KEA+E
Sbjct: 152 FKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVE 211

Query: 408 TFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGW 229
           +F+KMEKFG +  +SD+NRL+DTL K+R+V++AQ+VFD+M K  RF PD+K+Y+ILLEGW
Sbjct: 212 SFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKM-KHGRFKPDIKSYTILLEGW 270

Query: 228 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPS 49
           G+++NL  + ++ + M+DEG EPDVVT+GI+INA+CK++KYDEA+ +F   + AKN+KPS
Sbjct: 271 GQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFH-EMEAKNIKPS 329

Query: 48  PHIYCSLIHGLGAEKR 1
           PH++C+LI+GLG+EKR
Sbjct: 330 PHVFCTLINGLGSEKR 345



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAI 412
           +K   +SY  L+E  G+ +    + ++  EM+ +G      TFG+++  + + RK  EAI
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAI 315

Query: 411 ETFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEG 232
             F +ME   +K     +  LI+ L   + ++EA + F+++K    F P+  TY+ ++  
Sbjct: 316 RLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSG-FAPEAPTYNAVVGA 374

Query: 231 WGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKP 52
           +     +     +   M+  G+ P+  TY I+++   K +K  EA  +F+        +P
Sbjct: 375 YCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEP 434

Query: 51  SPHIYCSLIHGLGAEKR 1
           +   Y  +I     E+R
Sbjct: 435 TLSTYDIMIRMFCNEER 451


>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  264 bits (675), Expect = 7e-69
 Identities = 122/196 (62%), Positives = 168/196 (85%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETFGLIMRRYARCRKTKEAIE 409
           +KHT ESYN LIEALGKIKQFN IW++V +MK KG++++ETF LI RRYAR RK KEA+E
Sbjct: 152 FKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVE 211

Query: 408 TFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGW 229
           +F+KMEKFG +  +SD+NRL+DTL K+R+V++AQ+VFD+M K  RF PD+K+Y+ILLEGW
Sbjct: 212 SFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKM-KHGRFKPDIKSYTILLEGW 270

Query: 228 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPS 49
           G+++NL  + ++ + M+DEG EPDVVT+GI+INA+CK++KYDEA+ +F   + AKN+KPS
Sbjct: 271 GQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFH-EMEAKNIKPS 329

Query: 48  PHIYCSLIHGLGAEKR 1
           PH++C+LI+GLG+EKR
Sbjct: 330 PHVFCTLINGLGSEKR 345



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAI 412
           +K   +SY  L+E  G+ +    + ++  EM+ +G      TFG+++  + + RK  EAI
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAI 315

Query: 411 ETFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEG 232
             F +ME   +K     +  LI+ L   + ++EA + F+++K    F P+  TY+ ++  
Sbjct: 316 RLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSG-FAPEAPTYNAVVGA 374

Query: 231 WGEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKP 52
           +     +     +   M+  G+ P+  TY I+++   K +K  EA  +F+        +P
Sbjct: 375 YCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEP 434

Query: 51  SPHIYCSLIHGLGAEKR 1
           +   Y  +I     E+R
Sbjct: 435 TLSTYDIMIRMFCNEER 451


>ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
           gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical
           protein; 31939-30407 [Arabidopsis thaliana]
           gi|332197036|gb|AEE35157.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  260 bits (665), Expect = 1e-67
 Identities = 125/196 (63%), Positives = 161/196 (82%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETFGLIMRRYARCRKTKEAIE 409
           +KHT  +YNALIE+LGKIKQF  IW +V++MK K L++KETF LI RRYAR RK KEAI 
Sbjct: 124 FKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIG 183

Query: 408 TFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGW 229
            F KME+FG K E SD+NR++DTLSK+R+V +AQ+VFD+M KKKRF PD+K+Y+ILLEGW
Sbjct: 184 AFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKM-KKKRFEPDIKSYTILLEGW 242

Query: 228 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPS 49
           G+E NL  V+++ + MKDEG EPDVV YGI+INA+CK+KKY+EA+  F   +  +N KPS
Sbjct: 243 GQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFF-NEMEQRNCKPS 301

Query: 48  PHIYCSLIHGLGAEKR 1
           PHI+CSLI+GLG+EK+
Sbjct: 302 PHIFCSLINGLGSEKK 317



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 1/188 (0%)
 Frame = -2

Query: 561 ALIEALGKIKQFNSIWDIVEEMKGKGL-VTKETFGLIMRRYARCRKTKEAIETFKKMEKF 385
           +LI  LG  K+ N   +  E  K  G  +   T+  ++  Y   ++ ++A +T  +M   
Sbjct: 307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366

Query: 384 GMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGWGEERNLEM 205
           G+      Y+ ++  L + +  +EA +V+  M  +    P V TY I++  +  +  L+M
Sbjct: 367 GVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE----PTVSTYEIMVRMFCNKERLDM 422

Query: 204 VEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPSPHIYCSLI 25
              +   MK +G+ P +  +  +I A C   K DEA E F   +L   ++P  H++  L 
Sbjct: 423 AIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYF-NEMLDVGIRPPGHMFSRLK 481

Query: 24  HGLGAEKR 1
             L  E R
Sbjct: 482 QTLLDEGR 489


>ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|222864935|gb|EEF02066.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score =  260 bits (664), Expect = 1e-67
 Identities = 125/196 (63%), Positives = 162/196 (82%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETFGLIMRRYARCRKTKEAIE 409
           ++++ ESY+ALIE+LGKIKQFN IW++V +MK KGL+ KETF LI RRYAR RK KEA++
Sbjct: 35  FQYSTESYHALIESLGKIKQFNVIWNLVTDMKQKGLLNKETFALISRRYARARKVKEAVD 94

Query: 408 TFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGW 229
            F KMEKFG+K E SD NRL+DTL K+R V+ AQ VFD+M  K+ F+ D+K+Y+ILLEGW
Sbjct: 95  AFMKMEKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKM-NKRGFVADIKSYTILLEGW 153

Query: 228 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPS 49
           G+E+NL  + ++   MKDEG EPDVVTYGI+INA+CKS++YD+A+E+F   + AKN KPS
Sbjct: 154 GQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFH-EMEAKNCKPS 212

Query: 48  PHIYCSLIHGLGAEKR 1
           PHIYC+LI+GLGAEKR
Sbjct: 213 PHIYCTLINGLGAEKR 228



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
 Frame = -2

Query: 573 ESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAIETFKK 397
           +SY  L+E  G+ K  + + ++  EMK +G      T+G+++  + + R+  +AIE F +
Sbjct: 144 KSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHE 203

Query: 396 MEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEG--WGE 223
           ME    K     Y  LI+ L   + + EA + F E+ K   F+P+  TY+ ++    W E
Sbjct: 204 MEAKNCKPSPHIYCTLINGLGAEKRLSEALEFF-ELSKASGFVPEAPTYNAVVGAYCWSE 262

Query: 222 ERN---------------------------------LEMVEDLCKRMKDEGLEPDVVTYG 142
             +                                  ++   + ++M  EG +P V TY 
Sbjct: 263 RMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYE 322

Query: 141 IVINAYCKSKKYDEALEIFRGAILAKNLKPSPHIYCSLIHGLGAEKR 1
           I++  +C   + D A++++   + AK + P  H++ +LI+ L  E +
Sbjct: 323 IIVRMFCNEDRVDMAIKVW-DQMKAKGILPVMHMFSTLINSLCHESK 368


>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  259 bits (663), Expect = 2e-67
 Identities = 120/196 (61%), Positives = 164/196 (83%)
 Frame = -2

Query: 588 YKHTNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKETFGLIMRRYARCRKTKEAIE 409
           +K++ E+YNALIEALGKIKQF  IW++V +M+ KGL+T+ETF LI RRYAR RK KEA+E
Sbjct: 141 FKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVE 200

Query: 408 TFKKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGW 229
           TF+KMEKFG++  LSD+NRL+D L K+RHV+ AQ+VFD+MK +K F PD+K+Y+ILLEGW
Sbjct: 201 TFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRK-FRPDIKSYTILLEGW 259

Query: 228 GEERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPS 49
           G+E+NL  ++++ + MKDEG EPD VTYGI+INA+CK+++YD A+E+F   + A    P+
Sbjct: 260 GQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFH-KMEANKCMPT 318

Query: 48  PHIYCSLIHGLGAEKR 1
           PHIYC+LI+GLG+E+R
Sbjct: 319 PHIYCTLINGLGSERR 334



 Score = 75.1 bits (183), Expect = 8e-12
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 1/192 (0%)
 Frame = -2

Query: 573 ESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAIETFKK 397
           +SY  L+E  G+ +    + ++  EMK +G      T+G+++  + + R+   A+E F K
Sbjct: 250 KSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHK 309

Query: 396 MEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGWGEER 217
           ME          Y  LI+ L   R + EA Q F E  K   F P+  TY+ ++  + +  
Sbjct: 310 MEANKCMPTPHIYCTLINGLGSERRLTEALQFF-ERSKASGFTPEAPTYNAVVGSYCQSM 368

Query: 216 NLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPSPHIY 37
            ++    +   M+  G+ P   TY I+++   K+++  EA  +F+G       +PS   Y
Sbjct: 369 RMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTY 428

Query: 36  CSLIHGLGAEKR 1
             ++     E+R
Sbjct: 429 EIVVRMFCNEER 440



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
 Frame = -2

Query: 579 TNESYNALIEALGKIKQFNSIWDIVEEMKGKGLVTKE-TFGLIMRRYARCRKTKEAIETF 403
           T   Y  LI  LG  ++        E  K  G   +  T+  ++  Y +  +  +A    
Sbjct: 318 TPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIV 377

Query: 402 KKMEKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGWGE 223
            +M K G+  +   Y+ ++  L KAR  +EA +VF  M  +    P V TY I++  +  
Sbjct: 378 DEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCN 437

Query: 222 ERNLEMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPSPH 43
           E  ++M   +   MK +G+ P +  +  +IN+ C   K DEA + F   +L   ++P   
Sbjct: 438 EERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFH-EMLDMGIRPPAA 496

Query: 42  IYCSL 28
           ++ +L
Sbjct: 497 MFSNL 501



 Score = 71.6 bits (174), Expect = 9e-11
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 1/190 (0%)
 Frame = -2

Query: 567 YNALIEALGKIKQFNSIWDIVEEMKGKGLVTK-ETFGLIMRRYARCRKTKEAIETFKKME 391
           +N L++AL K +      ++ ++MK +      +++ +++  + + +      E +++M+
Sbjct: 217 FNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMK 276

Query: 390 KFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGWGEERNL 211
             G + +   Y  LI+   KAR    A ++F +M+  K  MP    Y  L+ G G ER L
Sbjct: 277 DEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANK-CMPTPHIYCTLINGLGSERRL 335

Query: 210 EMVEDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGAILAKNLKPSPHIYCS 31
                  +R K  G  P+  TY  V+ +YC+S + D+A  I    +    + P    Y  
Sbjct: 336 TEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIV-DEMRKCGVGPQTRTYDI 394

Query: 30  LIHGLGAEKR 1
           ++H L   +R
Sbjct: 395 ILHHLIKARR 404