BLASTX nr result

ID: Coptis24_contig00027801 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027801
         (1244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22109.3| unnamed protein product [Vitis vinifera]              321   2e-85
ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containi...   321   2e-85
ref|XP_002313272.1| predicted protein [Populus trichocarpa] gi|2...   299   1e-78
ref|XP_002299968.1| predicted protein [Populus trichocarpa] gi|2...   298   2e-78
ref|XP_002533283.1| pentatricopeptide repeat-containing protein,...   292   1e-76

>emb|CBI22109.3| unnamed protein product [Vitis vinifera]
          Length = 386

 Score =  321 bits (823), Expect = 2e-85
 Identities = 171/325 (52%), Positives = 227/325 (69%), Gaps = 1/325 (0%)
 Frame = -1

Query: 1058 VSKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFYKET-CTAYI 882
            VS + P+ AILSK + SYQ + T+AS D+  V D  L+ ++++ E  P F  E  CT YI
Sbjct: 46   VSWILPFFAILSKSIGSYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYI 105

Query: 881  ERLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNF 702
            ++L K+GN + AA  +QSLH+KHIFL P  YNLLL    E    + LS+IFKD LVS   
Sbjct: 106  DKLLKAGNPSAAARFMQSLHDKHIFLSPNAYNLLLVAASEANAIDFLSQIFKDLLVSNKP 165

Query: 701  LNPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMI 522
            L+   Y  + K F  + DSV LLKFV EVSE+  P++         AFAE +QI+K+++I
Sbjct: 166  LSSTSYFNVAKVFTKTDDSV-LLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLII 224

Query: 521  FDLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRK 342
            FD MK L CKPD +TYN V+  LGRAG +D+MLH F+SMK +++ PDIISYNTL+NS +K
Sbjct: 225  FDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQK 284

Query: 341  LGRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHI 162
            +GRLDLC+VF +EM EN + PDLRTY A+I+ FG+ G+++EAL  F +MK+  I PSI+I
Sbjct: 285  VGRLDLCLVFFREMGENGLKPDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYI 344

Query: 161  YRSLISNSKKAEKLDLATSLLEEMN 87
            YRSLI+ SKK  K++LA SL EEMN
Sbjct: 345  YRSLINYSKKMGKVELAMSLSEEMN 369


>ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11900-like
            [Vitis vinifera]
          Length = 357

 Score =  321 bits (823), Expect = 2e-85
 Identities = 171/325 (52%), Positives = 227/325 (69%), Gaps = 1/325 (0%)
 Frame = -1

Query: 1058 VSKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFYKET-CTAYI 882
            VS + P+ AILSK + SYQ + T+AS D+  V D  L+ ++++ E  P F  E  CT YI
Sbjct: 17   VSWILPFFAILSKSIGSYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYI 76

Query: 881  ERLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNF 702
            ++L K+GN + AA  +QSLH+KHIFL P  YNLLL    E    + LS+IFKD LVS   
Sbjct: 77   DKLLKAGNPSAAARFMQSLHDKHIFLSPNAYNLLLVAASEANAIDFLSQIFKDLLVSNKP 136

Query: 701  LNPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMI 522
            L+   Y  + K F  + DSV LLKFV EVSE+  P++         AFAE +QI+K+++I
Sbjct: 137  LSSTSYFNVAKVFTKTDDSV-LLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLII 195

Query: 521  FDLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRK 342
            FD MK L CKPD +TYN V+  LGRAG +D+MLH F+SMK +++ PDIISYNTL+NS +K
Sbjct: 196  FDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQK 255

Query: 341  LGRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHI 162
            +GRLDLC+VF +EM EN + PDLRTY A+I+ FG+ G+++EAL  F +MK+  I PSI+I
Sbjct: 256  VGRLDLCLVFFREMGENGLKPDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYI 315

Query: 161  YRSLISNSKKAEKLDLATSLLEEMN 87
            YRSLI+ SKK  K++LA SL EEMN
Sbjct: 316  YRSLINYSKKMGKVELAMSLSEEMN 340


>ref|XP_002313272.1| predicted protein [Populus trichocarpa] gi|222849680|gb|EEE87227.1|
            predicted protein [Populus trichocarpa]
          Length = 382

 Score =  299 bits (765), Expect = 1e-78
 Identities = 160/348 (45%), Positives = 225/348 (64%), Gaps = 1/348 (0%)
 Frame = -1

Query: 1079 LPSAHLGVSKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDP-VFYK 903
            + S  +G   + P+ A +++ +  Y+ + T+AS D  ++ D  L+ ++   EN P    +
Sbjct: 34   ITSIPVGSHWILPHFATITEVIGHYKQLTTRASFDGEEIKDDNLNQMLEAVENAPECTTR 93

Query: 902  ETCTAYIERLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKD 723
            +  TAY+  LCK+G +  A  LL+ L +K+IFLGP  YN++L    E  D E+LS++FKD
Sbjct: 94   KVGTAYVHNLCKAGTLFAAVRLLRLLRDKNIFLGPSAYNIILVTASEKNDVEILSQVFKD 153

Query: 722  ALVSCNFLNPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQ 543
             ++S   L    Y  L + F+ S D V LL+ V EVSE+  P ST        AFAE  Q
Sbjct: 154  LILSFQSLPSSLYLKLARGFVKSNDDVQLLRLVKEVSELTFPSSTKVVNRFIFAFAECGQ 213

Query: 542  IDKAIMIFDLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNT 363
             DKAI+IF+ M+ L CKPD VTYN V+D+LGRAG ID+ML  FASMKE+ ++PD ISYNT
Sbjct: 214  FDKAILIFEQMENLKCKPDLVTYNTVLDLLGRAGRIDEMLGEFASMKEAGILPDFISYNT 273

Query: 362  LINSFRKLGRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRG 183
            L+N   K+GRLDLC V+ ++M  N ++PDL TYTA+I SFG+ G+I+E+L  F +MK + 
Sbjct: 274  LLNQLTKVGRLDLCSVYFRDMVGNGIEPDLLTYTALIWSFGQSGNIEESLRLFNEMKTKQ 333

Query: 182  IHPSIHIYRSLISNSKKAEKLDLATSLLEEMNFSVLNY*SL*CFKEEH 39
            I PSI+IYRSLI++ KK  K++LA + LEEMN S+ N      FK  H
Sbjct: 334  IRPSIYIYRSLIASLKKMGKIELAMTFLEEMNASMSNLAGPKDFKRTH 381


>ref|XP_002299968.1| predicted protein [Populus trichocarpa] gi|222847226|gb|EEE84773.1|
            predicted protein [Populus trichocarpa]
          Length = 352

 Score =  298 bits (763), Expect = 2e-78
 Identities = 158/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)
 Frame = -1

Query: 1055 SKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFY-KETCTAYIE 879
            S++ P++A +++ ++  + + T+ S D+ +V D  L+ +I   EN P    ++  TAY+ 
Sbjct: 12   SQISPHLATITEVIDHCKRLTTRVSFDEGEVKDDNLNQMINAVENAPESATRKIGTAYVH 71

Query: 878  RLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFL 699
             LCK+GN+  A  LLQSL +K+IFLGP  YN++L    E  D  +LS++FKD +VSC  L
Sbjct: 72   NLCKAGNLFTAVRLLQSLCDKNIFLGPSAYNIILVAASEKNDIAILSQVFKDLIVSCQSL 131

Query: 698  NPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIF 519
                Y  L + F+ + D V LL+ V EVSEM  P S         AFAE  Q DKA++IF
Sbjct: 132  PSTSYLKLARGFVKTNDDVQLLRLVKEVSEMTFPSSMMVVNRIIFAFAECGQFDKALLIF 191

Query: 518  DLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKL 339
              M+ L CKPD VTYN V+D+LG AG ID+ML  FASMKE+ ++PD ISYNTL+N   K+
Sbjct: 192  KQMENLKCKPDLVTYNTVLDLLGHAGRIDEMLCEFASMKEAGILPDFISYNTLLNQLWKV 251

Query: 338  GRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIY 159
            GRLDLC V+ ++M E+ ++PDL TYTA+I SFG+ G+I+E+L  F +MK + I PSI+IY
Sbjct: 252  GRLDLCSVYSRDMVESGIEPDLLTYTALIGSFGQSGNIEESLRLFNEMKTKQIRPSIYIY 311

Query: 158  RSLISNSKKAEKLDLATSLLEEMNFSVLN 72
            RSLI++ KK  K++LA +LLEEMN S+ N
Sbjct: 312  RSLIASLKKMGKVELAMTLLEEMNASMSN 340


>ref|XP_002533283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223526886|gb|EEF29094.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 405

 Score =  292 bits (748), Expect = 1e-76
 Identities = 146/306 (47%), Positives = 211/306 (68%)
 Frame = -1

Query: 989  QASTDDHKVTDGVLSGLIAEEENDPVFYKETCTAYIERLCKSGNVADAAGLLQSLHNKHI 810
            +AS ++ +V +  L+ ++A  +N P   +E CT Y+ +LC SG++  A  LLQSL N++I
Sbjct: 88   KASLNEDEVAEAYLNIILAAIQNAPSSIEEICTGYLHKLCNSGSLFVAVRLLQSLQNRNI 147

Query: 809  FLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNSTDSVPLLK 630
             LGP  YNL++    E    +++S++FKD ++SC  L    +  L + F+N+ D V L+K
Sbjct: 148  TLGPNAYNLVMEAAGEANKADIVSRVFKDLMMSCKSLPSSSFINLARGFINTNDHVLLMK 207

Query: 629  FVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTYNIVMDILG 450
            FV EV E+  P+S         AFAE +Q DKA++IFD +K L  KPD +TYN+V+ ILG
Sbjct: 208  FVKEVLELAFPRSMVVINRIIFAFAECRQFDKALLIFDQIKDLEYKPDLITYNMVLHILG 267

Query: 449  RAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENRVDPDLR 270
            RAG +D+ML+ F+SMKE+ ++PD I YNTL+N  +K GRLDLC+V+++EM E+ ++ DL 
Sbjct: 268  RAGRVDEMLYEFSSMKEAGIVPDFICYNTLLNQLQKAGRLDLCLVYIREMGESGIEADLL 327

Query: 269  TYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDLATSLLEEM 90
            TYTA+I SFG+ GHI+E+L  F  MK R I PSI+IYRSLI+ +KK  K++LA +LLEEM
Sbjct: 328  TYTALIQSFGKSGHIEESLRLFDDMKTRQIRPSIYIYRSLINTAKKMGKVELAMTLLEEM 387

Query: 89   NFSVLN 72
            N S  N
Sbjct: 388  NASPPN 393


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