BLASTX nr result
ID: Coptis24_contig00027801
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00027801
(1244 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22109.3| unnamed protein product [Vitis vinifera] 321 2e-85
ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containi... 321 2e-85
ref|XP_002313272.1| predicted protein [Populus trichocarpa] gi|2... 299 1e-78
ref|XP_002299968.1| predicted protein [Populus trichocarpa] gi|2... 298 2e-78
ref|XP_002533283.1| pentatricopeptide repeat-containing protein,... 292 1e-76
>emb|CBI22109.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 321 bits (823), Expect = 2e-85
Identities = 171/325 (52%), Positives = 227/325 (69%), Gaps = 1/325 (0%)
Frame = -1
Query: 1058 VSKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFYKET-CTAYI 882
VS + P+ AILSK + SYQ + T+AS D+ V D L+ ++++ E P F E CT YI
Sbjct: 46 VSWILPFFAILSKSIGSYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYI 105
Query: 881 ERLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNF 702
++L K+GN + AA +QSLH+KHIFL P YNLLL E + LS+IFKD LVS
Sbjct: 106 DKLLKAGNPSAAARFMQSLHDKHIFLSPNAYNLLLVAASEANAIDFLSQIFKDLLVSNKP 165
Query: 701 LNPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMI 522
L+ Y + K F + DSV LLKFV EVSE+ P++ AFAE +QI+K+++I
Sbjct: 166 LSSTSYFNVAKVFTKTDDSV-LLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLII 224
Query: 521 FDLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRK 342
FD MK L CKPD +TYN V+ LGRAG +D+MLH F+SMK +++ PDIISYNTL+NS +K
Sbjct: 225 FDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQK 284
Query: 341 LGRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHI 162
+GRLDLC+VF +EM EN + PDLRTY A+I+ FG+ G+++EAL F +MK+ I PSI+I
Sbjct: 285 VGRLDLCLVFFREMGENGLKPDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYI 344
Query: 161 YRSLISNSKKAEKLDLATSLLEEMN 87
YRSLI+ SKK K++LA SL EEMN
Sbjct: 345 YRSLINYSKKMGKVELAMSLSEEMN 369
>ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11900-like
[Vitis vinifera]
Length = 357
Score = 321 bits (823), Expect = 2e-85
Identities = 171/325 (52%), Positives = 227/325 (69%), Gaps = 1/325 (0%)
Frame = -1
Query: 1058 VSKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFYKET-CTAYI 882
VS + P+ AILSK + SYQ + T+AS D+ V D L+ ++++ E P F E CT YI
Sbjct: 17 VSWILPFFAILSKSIGSYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYI 76
Query: 881 ERLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNF 702
++L K+GN + AA +QSLH+KHIFL P YNLLL E + LS+IFKD LVS
Sbjct: 77 DKLLKAGNPSAAARFMQSLHDKHIFLSPNAYNLLLVAASEANAIDFLSQIFKDLLVSNKP 136
Query: 701 LNPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMI 522
L+ Y + K F + DSV LLKFV EVSE+ P++ AFAE +QI+K+++I
Sbjct: 137 LSSTSYFNVAKVFTKTDDSV-LLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLII 195
Query: 521 FDLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRK 342
FD MK L CKPD +TYN V+ LGRAG +D+MLH F+SMK +++ PDIISYNTL+NS +K
Sbjct: 196 FDHMKSLKCKPDLITYNTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQK 255
Query: 341 LGRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHI 162
+GRLDLC+VF +EM EN + PDLRTY A+I+ FG+ G+++EAL F +MK+ I PSI+I
Sbjct: 256 VGRLDLCLVFFREMGENGLKPDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYI 315
Query: 161 YRSLISNSKKAEKLDLATSLLEEMN 87
YRSLI+ SKK K++LA SL EEMN
Sbjct: 316 YRSLINYSKKMGKVELAMSLSEEMN 340
>ref|XP_002313272.1| predicted protein [Populus trichocarpa] gi|222849680|gb|EEE87227.1|
predicted protein [Populus trichocarpa]
Length = 382
Score = 299 bits (765), Expect = 1e-78
Identities = 160/348 (45%), Positives = 225/348 (64%), Gaps = 1/348 (0%)
Frame = -1
Query: 1079 LPSAHLGVSKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDP-VFYK 903
+ S +G + P+ A +++ + Y+ + T+AS D ++ D L+ ++ EN P +
Sbjct: 34 ITSIPVGSHWILPHFATITEVIGHYKQLTTRASFDGEEIKDDNLNQMLEAVENAPECTTR 93
Query: 902 ETCTAYIERLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKD 723
+ TAY+ LCK+G + A LL+ L +K+IFLGP YN++L E D E+LS++FKD
Sbjct: 94 KVGTAYVHNLCKAGTLFAAVRLLRLLRDKNIFLGPSAYNIILVTASEKNDVEILSQVFKD 153
Query: 722 ALVSCNFLNPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQ 543
++S L Y L + F+ S D V LL+ V EVSE+ P ST AFAE Q
Sbjct: 154 LILSFQSLPSSLYLKLARGFVKSNDDVQLLRLVKEVSELTFPSSTKVVNRFIFAFAECGQ 213
Query: 542 IDKAIMIFDLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNT 363
DKAI+IF+ M+ L CKPD VTYN V+D+LGRAG ID+ML FASMKE+ ++PD ISYNT
Sbjct: 214 FDKAILIFEQMENLKCKPDLVTYNTVLDLLGRAGRIDEMLGEFASMKEAGILPDFISYNT 273
Query: 362 LINSFRKLGRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRG 183
L+N K+GRLDLC V+ ++M N ++PDL TYTA+I SFG+ G+I+E+L F +MK +
Sbjct: 274 LLNQLTKVGRLDLCSVYFRDMVGNGIEPDLLTYTALIWSFGQSGNIEESLRLFNEMKTKQ 333
Query: 182 IHPSIHIYRSLISNSKKAEKLDLATSLLEEMNFSVLNY*SL*CFKEEH 39
I PSI+IYRSLI++ KK K++LA + LEEMN S+ N FK H
Sbjct: 334 IRPSIYIYRSLIASLKKMGKIELAMTFLEEMNASMSNLAGPKDFKRTH 381
>ref|XP_002299968.1| predicted protein [Populus trichocarpa] gi|222847226|gb|EEE84773.1|
predicted protein [Populus trichocarpa]
Length = 352
Score = 298 bits (763), Expect = 2e-78
Identities = 158/329 (48%), Positives = 222/329 (67%), Gaps = 1/329 (0%)
Frame = -1
Query: 1055 SKMWPYVAILSKYVNSYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFY-KETCTAYIE 879
S++ P++A +++ ++ + + T+ S D+ +V D L+ +I EN P ++ TAY+
Sbjct: 12 SQISPHLATITEVIDHCKRLTTRVSFDEGEVKDDNLNQMINAVENAPESATRKIGTAYVH 71
Query: 878 RLCKSGNVADAAGLLQSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFL 699
LCK+GN+ A LLQSL +K+IFLGP YN++L E D +LS++FKD +VSC L
Sbjct: 72 NLCKAGNLFTAVRLLQSLCDKNIFLGPSAYNIILVAASEKNDIAILSQVFKDLIVSCQSL 131
Query: 698 NPLFYPTLTKAFLNSTDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIF 519
Y L + F+ + D V LL+ V EVSEM P S AFAE Q DKA++IF
Sbjct: 132 PSTSYLKLARGFVKTNDDVQLLRLVKEVSEMTFPSSMMVVNRIIFAFAECGQFDKALLIF 191
Query: 518 DLMKGLNCKPDRVTYNIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKL 339
M+ L CKPD VTYN V+D+LG AG ID+ML FASMKE+ ++PD ISYNTL+N K+
Sbjct: 192 KQMENLKCKPDLVTYNTVLDLLGHAGRIDEMLCEFASMKEAGILPDFISYNTLLNQLWKV 251
Query: 338 GRLDLCVVFLQEMRENRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIY 159
GRLDLC V+ ++M E+ ++PDL TYTA+I SFG+ G+I+E+L F +MK + I PSI+IY
Sbjct: 252 GRLDLCSVYSRDMVESGIEPDLLTYTALIGSFGQSGNIEESLRLFNEMKTKQIRPSIYIY 311
Query: 158 RSLISNSKKAEKLDLATSLLEEMNFSVLN 72
RSLI++ KK K++LA +LLEEMN S+ N
Sbjct: 312 RSLIASLKKMGKVELAMTLLEEMNASMSN 340
>ref|XP_002533283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526886|gb|EEF29094.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 405
Score = 292 bits (748), Expect = 1e-76
Identities = 146/306 (47%), Positives = 211/306 (68%)
Frame = -1
Query: 989 QASTDDHKVTDGVLSGLIAEEENDPVFYKETCTAYIERLCKSGNVADAAGLLQSLHNKHI 810
+AS ++ +V + L+ ++A +N P +E CT Y+ +LC SG++ A LLQSL N++I
Sbjct: 88 KASLNEDEVAEAYLNIILAAIQNAPSSIEEICTGYLHKLCNSGSLFVAVRLLQSLQNRNI 147
Query: 809 FLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNSTDSVPLLK 630
LGP YNL++ E +++S++FKD ++SC L + L + F+N+ D V L+K
Sbjct: 148 TLGPNAYNLVMEAAGEANKADIVSRVFKDLMMSCKSLPSSSFINLARGFINTNDHVLLMK 207
Query: 629 FVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTYNIVMDILG 450
FV EV E+ P+S AFAE +Q DKA++IFD +K L KPD +TYN+V+ ILG
Sbjct: 208 FVKEVLELAFPRSMVVINRIIFAFAECRQFDKALLIFDQIKDLEYKPDLITYNMVLHILG 267
Query: 449 RAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENRVDPDLR 270
RAG +D+ML+ F+SMKE+ ++PD I YNTL+N +K GRLDLC+V+++EM E+ ++ DL
Sbjct: 268 RAGRVDEMLYEFSSMKEAGIVPDFICYNTLLNQLQKAGRLDLCLVYIREMGESGIEADLL 327
Query: 269 TYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDLATSLLEEM 90
TYTA+I SFG+ GHI+E+L F MK R I PSI+IYRSLI+ +KK K++LA +LLEEM
Sbjct: 328 TYTALIQSFGKSGHIEESLRLFDDMKTRQIRPSIYIYRSLINTAKKMGKVELAMTLLEEM 387
Query: 89 NFSVLN 72
N S N
Sbjct: 388 NASPPN 393