BLASTX nr result
ID: Coptis24_contig00027792
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027792 (374 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269611.1| PREDICTED: RING-H2 finger protein ATL13 [Vit... 125 4e-27 emb|CAN71824.1| hypothetical protein VITISV_042464 [Vitis vinifera] 122 3e-26 ref|XP_003610233.1| RING finger protein [Medicago truncatula] gi... 103 1e-20 ref|XP_003542294.1| PREDICTED: LOW QUALITY PROTEIN: RING-H2 fing... 93 3e-17 ref|XP_002533989.1| ring finger protein, putative [Ricinus commu... 92 3e-17 >ref|XP_002269611.1| PREDICTED: RING-H2 finger protein ATL13 [Vitis vinifera] Length = 543 Score = 125 bits (314), Expect = 4e-27 Identities = 63/122 (51%), Positives = 87/122 (71%), Gaps = 2/122 (1%) Frame = +3 Query: 6 GSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQKAEAA-DDFKMKDSN 182 G+A+ ++K++SFSISKIWLR KKE FP+ + AA DD K+K+ + Sbjct: 417 GNAIGRSKRESFSISKIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAADDLKLKNVS 476 Query: 183 NTSRRTISEIDVSRWDSSGSEMGVDEEVGSSNILDSQP-MPSFARRTLLWLVGKQNKVVH 359 +++ RT+SE+++ RW++ GSE+G DEE+ S N LDSQ PSFARRTLLWL+G+QNKVVH Sbjct: 477 SSTGRTVSELEIGRWENGGSELGCDEEMQSCNSLDSQANPPSFARRTLLWLMGRQNKVVH 536 Query: 360 SS 365 SS Sbjct: 537 SS 538 >emb|CAN71824.1| hypothetical protein VITISV_042464 [Vitis vinifera] Length = 543 Score = 122 bits (306), Expect = 3e-26 Identities = 62/122 (50%), Positives = 86/122 (70%), Gaps = 2/122 (1%) Frame = +3 Query: 6 GSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQKAEAA-DDFKMKDSN 182 G+A+ ++K++SFSISKIWLR KKE FP+ + AA D K+K+ + Sbjct: 417 GNAIGRSKRESFSISKIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAAXDXKLKNVS 476 Query: 183 NTSRRTISEIDVSRWDSSGSEMGVDEEVGSSNILDSQP-MPSFARRTLLWLVGKQNKVVH 359 +++ RT+SE+++ RW++ GSE+G DEE+ S N LDSQ PSFARRTLLWL+G+QNKVVH Sbjct: 477 SSTGRTVSELEIGRWENGGSELGCDEEMQSCNSLDSQANPPSFARRTLLWLMGRQNKVVH 536 Query: 360 SS 365 SS Sbjct: 537 SS 538 >ref|XP_003610233.1| RING finger protein [Medicago truncatula] gi|355511288|gb|AES92430.1| RING finger protein [Medicago truncatula] Length = 511 Score = 103 bits (258), Expect = 1e-20 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 5/126 (3%) Frame = +3 Query: 6 GSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQK--AEAADDFKMKDS 179 G+ + +++K+SFSISKIWLR KK+K FPLQ DD K K+ Sbjct: 382 GAGIGRSRKESFSISKIWLRGKKDKKNGDVTDSSRRAVSFRFPLQSNVGSGNDDLKGKNG 441 Query: 180 NNTSRRTISEIDVSRWDSSGSE--MGVDEEVGSSNILDSQPM-PSFARRTLLWLVGKQNK 350 +R T+SE+D +W++ G G DEE S +DSQ PSFARRTLLWL GKQNK Sbjct: 442 MFHTRSTVSEMDFGKWENGGGSEFSGYDEENQSCYSMDSQARAPSFARRTLLWLTGKQNK 501 Query: 351 VVHSSS 368 VVHSS+ Sbjct: 502 VVHSST 507 >ref|XP_003542294.1| PREDICTED: LOW QUALITY PROTEIN: RING-H2 finger protein ATL13-like, partial [Glycine max] Length = 524 Score = 92.8 bits (229), Expect = 3e-17 Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 12/134 (8%) Frame = +3 Query: 9 SAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQKAEAA--------DDF 164 +A+ +++K+SFSISKIWLR KK+K FP++ + A DD Sbjct: 392 AAIGRSRKESFSISKIWLRGKKDK-PNAGADSSRRAVSFRFPVKSSVVAAASGSADDDDL 450 Query: 165 KMKDSNNTSRRTISEIDVSRWDSS-GSEMGVDEEVGSSNILDSQP--MPSFARRTLLWLV 335 K K+ +R T+SE+D+ +W++ G+E DEE S +DS PSFARRTLLWL Sbjct: 451 KGKNCKFDTRSTMSEMDIGKWENGRGTEFDYDEENQSCYSMDSSQARAPSFARRTLLWLT 510 Query: 336 -GKQNKVVHSSSNV 374 G+QNKVVHS+SN+ Sbjct: 511 GGRQNKVVHSASNL 524 >ref|XP_002533989.1| ring finger protein, putative [Ricinus communis] gi|223526024|gb|EEF28396.1| ring finger protein, putative [Ricinus communis] Length = 495 Score = 92.4 bits (228), Expect = 3e-17 Identities = 57/126 (45%), Positives = 78/126 (61%), Gaps = 5/126 (3%) Frame = +3 Query: 3 IGSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQK----AEAADDFKM 170 IG+++ ++K++SFSISKIWLR +KEK FP+ K + D+ K+ Sbjct: 373 IGNSIGRSKRESFSISKIWLRGEKEK-QKPPGDSSRRAFSFRFPVNKNVVPGDEDDNLKV 431 Query: 171 KDSNNT-SRRTISEIDVSRWDSSGSEMGVDEEVGSSNILDSQPMPSFARRTLLWLVGKQN 347 K+ N + +RRT SEI + RW++ S DEE N + + PSFARRTLLWLVG+QN Sbjct: 432 KNGNGSGARRTNSEIGIGRWENRFS---FDEE----NQICNAKTPSFARRTLLWLVGRQN 484 Query: 348 KVVHSS 365 KVVHSS Sbjct: 485 KVVHSS 490