BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027792
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269611.1| PREDICTED: RING-H2 finger protein ATL13 [Vit...   125   4e-27
emb|CAN71824.1| hypothetical protein VITISV_042464 [Vitis vinifera]   122   3e-26
ref|XP_003610233.1| RING finger protein [Medicago truncatula] gi...   103   1e-20
ref|XP_003542294.1| PREDICTED: LOW QUALITY PROTEIN: RING-H2 fing...    93   3e-17
ref|XP_002533989.1| ring finger protein, putative [Ricinus commu...    92   3e-17

>ref|XP_002269611.1| PREDICTED: RING-H2 finger protein ATL13 [Vitis vinifera]
          Length = 543

 Score =  125 bits (314), Expect = 4e-27
 Identities = 63/122 (51%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
 Frame = +3

Query: 6   GSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQKAEAA-DDFKMKDSN 182
           G+A+ ++K++SFSISKIWLR KKE                 FP+  + AA DD K+K+ +
Sbjct: 417 GNAIGRSKRESFSISKIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAADDLKLKNVS 476

Query: 183 NTSRRTISEIDVSRWDSSGSEMGVDEEVGSSNILDSQP-MPSFARRTLLWLVGKQNKVVH 359
           +++ RT+SE+++ RW++ GSE+G DEE+ S N LDSQ   PSFARRTLLWL+G+QNKVVH
Sbjct: 477 SSTGRTVSELEIGRWENGGSELGCDEEMQSCNSLDSQANPPSFARRTLLWLMGRQNKVVH 536

Query: 360 SS 365
           SS
Sbjct: 537 SS 538


>emb|CAN71824.1| hypothetical protein VITISV_042464 [Vitis vinifera]
          Length = 543

 Score =  122 bits (306), Expect = 3e-26
 Identities = 62/122 (50%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
 Frame = +3

Query: 6   GSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQKAEAA-DDFKMKDSN 182
           G+A+ ++K++SFSISKIWLR KKE                 FP+  + AA  D K+K+ +
Sbjct: 417 GNAIGRSKRESFSISKIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAAXDXKLKNVS 476

Query: 183 NTSRRTISEIDVSRWDSSGSEMGVDEEVGSSNILDSQP-MPSFARRTLLWLVGKQNKVVH 359
           +++ RT+SE+++ RW++ GSE+G DEE+ S N LDSQ   PSFARRTLLWL+G+QNKVVH
Sbjct: 477 SSTGRTVSELEIGRWENGGSELGCDEEMQSCNSLDSQANPPSFARRTLLWLMGRQNKVVH 536

Query: 360 SS 365
           SS
Sbjct: 537 SS 538


>ref|XP_003610233.1| RING finger protein [Medicago truncatula]
           gi|355511288|gb|AES92430.1| RING finger protein
           [Medicago truncatula]
          Length = 511

 Score =  103 bits (258), Expect = 1e-20
 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
 Frame = +3

Query: 6   GSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQK--AEAADDFKMKDS 179
           G+ + +++K+SFSISKIWLR KK+K                FPLQ       DD K K+ 
Sbjct: 382 GAGIGRSRKESFSISKIWLRGKKDKKNGDVTDSSRRAVSFRFPLQSNVGSGNDDLKGKNG 441

Query: 180 NNTSRRTISEIDVSRWDSSGSE--MGVDEEVGSSNILDSQPM-PSFARRTLLWLVGKQNK 350
              +R T+SE+D  +W++ G     G DEE  S   +DSQ   PSFARRTLLWL GKQNK
Sbjct: 442 MFHTRSTVSEMDFGKWENGGGSEFSGYDEENQSCYSMDSQARAPSFARRTLLWLTGKQNK 501

Query: 351 VVHSSS 368
           VVHSS+
Sbjct: 502 VVHSST 507


>ref|XP_003542294.1| PREDICTED: LOW QUALITY PROTEIN: RING-H2 finger protein ATL13-like,
           partial [Glycine max]
          Length = 524

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
 Frame = +3

Query: 9   SAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQKAEAA--------DDF 164
           +A+ +++K+SFSISKIWLR KK+K                FP++ +  A        DD 
Sbjct: 392 AAIGRSRKESFSISKIWLRGKKDK-PNAGADSSRRAVSFRFPVKSSVVAAASGSADDDDL 450

Query: 165 KMKDSNNTSRRTISEIDVSRWDSS-GSEMGVDEEVGSSNILDSQP--MPSFARRTLLWLV 335
           K K+    +R T+SE+D+ +W++  G+E   DEE  S   +DS     PSFARRTLLWL 
Sbjct: 451 KGKNCKFDTRSTMSEMDIGKWENGRGTEFDYDEENQSCYSMDSSQARAPSFARRTLLWLT 510

Query: 336 -GKQNKVVHSSSNV 374
            G+QNKVVHS+SN+
Sbjct: 511 GGRQNKVVHSASNL 524


>ref|XP_002533989.1| ring finger protein, putative [Ricinus communis]
           gi|223526024|gb|EEF28396.1| ring finger protein,
           putative [Ricinus communis]
          Length = 495

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 57/126 (45%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
 Frame = +3

Query: 3   IGSAVSKNKKDSFSISKIWLRSKKEKLXXXXXXXXXXXXXXXFPLQK----AEAADDFKM 170
           IG+++ ++K++SFSISKIWLR +KEK                FP+ K     +  D+ K+
Sbjct: 373 IGNSIGRSKRESFSISKIWLRGEKEK-QKPPGDSSRRAFSFRFPVNKNVVPGDEDDNLKV 431

Query: 171 KDSNNT-SRRTISEIDVSRWDSSGSEMGVDEEVGSSNILDSQPMPSFARRTLLWLVGKQN 347
           K+ N + +RRT SEI + RW++  S    DEE    N + +   PSFARRTLLWLVG+QN
Sbjct: 432 KNGNGSGARRTNSEIGIGRWENRFS---FDEE----NQICNAKTPSFARRTLLWLVGRQN 484

Query: 348 KVVHSS 365
           KVVHSS
Sbjct: 485 KVVHSS 490