BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027775
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
emb|CBI29931.3| unnamed protein product [Vitis vinifera]              115   5e-24
ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    98   6e-19
ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containi...    98   6e-19
ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|2...    89   3e-16

>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  115 bits (287), Expect = 5e-24
 Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 36/174 (20%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y+WL + CF  GS+ DAK L A++ +SG  G+   L ++LID+YL HG+++ A+ +FD++
Sbjct: 13  YLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVC--------- 335
             ++V  WN ++S  LAKKL  QVL LF  ++ E  + P+ +TFA+VLR C         
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITE-NVTPDESTFASVLRACSGGKAPFQV 130

Query: 336 ---------------------------SESGGISLAQSIFEKLSFHNNISWVAM 416
                                      S++G + LA+ +FE+L   +++SWVAM
Sbjct: 131 TEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 33/123 (26%), Positives = 65/123 (52%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y  +L+ C   G++   + +  +V++SG   +  Y+ + LID+Y +HG+++ A  I   L
Sbjct: 418 YPSILRTCTSLGALDLGEQIHTQVIKSGFQFN-VYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSESGGISLA 362
            E  V SW A+++ +    L+ + L LF + +   GI  +N  F++ +  C+    ++  
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLF-QEMENQGIRSDNIGFSSAISACAGIQALNQG 535

Query: 363 QSI 371
           Q I
Sbjct: 536 QQI 538



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 33/116 (28%), Positives = 60/116 (51%)
 Frame = +3

Query: 39  SVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNLSETSVYSWNAIL 218
           +++  K + A ++++G +   T  S  LI +Y + G I  A   F  + E +V SWNA++
Sbjct: 632 NIKQGKQIHAMMIKTG-YDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMI 690

Query: 219 SVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSESGGISLAQSIFEKLS 386
           + +       + ++LF   + + G+ PN+ TF  VL  CS  G ++   S F  +S
Sbjct: 691 TGYSQHGYGSEAVSLFEE-MKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMS 745


>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  115 bits (287), Expect = 5e-24
 Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 36/174 (20%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y+WL + CF  GS+ DAK L A++ +SG  G+   L ++LID+YL HG+++ A+ +FD++
Sbjct: 13  YLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVC--------- 335
             ++V  WN ++S  LAKKL  QVL LF  ++ E  + P+ +TFA+VLR C         
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITE-NVTPDESTFASVLRACSGGKAPFQV 130

Query: 336 ---------------------------SESGGISLAQSIFEKLSFHNNISWVAM 416
                                      S++G + LA+ +FE+L   +++SWVAM
Sbjct: 131 TEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 33/123 (26%), Positives = 65/123 (52%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y  +L+ C   G++   + +  +V++SG   +  Y+ + LID+Y +HG+++ A  I   L
Sbjct: 418 YPSILRTCTSLGALDLGEQIHTQVIKSGFQFN-VYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSESGGISLA 362
            E  V SW A+++ +    L+ + L LF + +   GI  +N  F++ +  C+    ++  
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLF-QEMENQGIRSDNIGFSSAISACAGIQALNQG 535

Query: 363 QSI 371
           Q I
Sbjct: 536 QQI 538


>ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 36/174 (20%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y+WLL+ C   GS+ +   L  ++ +SG  G+   + + L+D Y RHGD + AV +FD  
Sbjct: 61  YLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDS-LVDNYFRHGDQHGAVKVFDEN 119

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVC--------- 335
           S  SV+SWN ++ VF+A+K   QV  LF R+LAE GI PN  TFA VL+ C         
Sbjct: 120 SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAE-GITPNGYTFAGVLKACVGGDIAFNY 178

Query: 336 ---------------------------SESGGISLAQSIFEKLSFHNNISWVAM 416
                                      S++G I  A+ +F  +   + ++WVAM
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/123 (28%), Positives = 62/123 (50%)
 Frame = +3

Query: 15   LKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNLSETS 194
            + A     +++  + + + VL++G   +   +S  LI +Y + G I+ A   F+++SE +
Sbjct: 672  ISAAASLANIKQGQQIHSMVLKTGYDSERE-VSNSLISLYAKSGSISDAWREFNDMSERN 730

Query: 195  VYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSESGGISLAQSIF 374
            V SWNA+++ +       + L LF  +    GI PN+ TF  VL  CS  G +      F
Sbjct: 731  VISWNAMITGYSQHGCGMEALRLFEEMKV-CGIMPNHVTFVGVLSACSHIGLVKEGLDYF 789

Query: 375  EKL 383
            E +
Sbjct: 790  ESM 792


>ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 36/174 (20%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y+WLL+ C   GS+ +   L  ++ +SG  G+   + + L+D Y RHGD + AV +FD  
Sbjct: 61  YLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDS-LVDNYFRHGDQHGAVKVFDEN 119

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVC--------- 335
           S  SV+SWN ++ VF+A+K   QV  LF R+LAE GI PN  TFA VL+ C         
Sbjct: 120 SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAE-GITPNGYTFAGVLKACVGGDIAFNY 178

Query: 336 ---------------------------SESGGISLAQSIFEKLSFHNNISWVAM 416
                                      S++G I  A+ +F  +   + ++WVAM
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/123 (28%), Positives = 62/123 (50%)
 Frame = +3

Query: 15   LKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNLSETS 194
            + A     +++  + + + VL++G   +   +S  LI +Y + G I+ A   F+++SE +
Sbjct: 672  ISAAASLANIKQGQQIHSMVLKTGYDSERE-VSNSLISLYAKSGSISDAWREFNDMSERN 730

Query: 195  VYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSESGGISLAQSIF 374
            V SWNA+++ +       + L LF  +    GI PN+ TF  VL  CS  G +      F
Sbjct: 731  VISWNAMITGYSQHGCGMEALRLFEEMKV-CGIMPNHVTFVGVLSACSHIGLVKEGLDYF 789

Query: 375  EKL 383
            E +
Sbjct: 790  ESM 792


>ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|222857540|gb|EEE95087.1|
           predicted protein [Populus trichocarpa]
          Length = 989

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           YIWLL  C   GS+ + K L  K+L+ G  G+ + L  +L+DVY   GD++  V +F+++
Sbjct: 13  YIWLLDLCLNSGSLVECKKLHGKILKLGF-GNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCS-ESGGISL 359
              SV SW+ I+S F+ KK+  +VL LF  ++ E  + P   +FA+VLR CS    GI  
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEE-NVSPTEISFASVLRACSGHRIGIRY 130

Query: 360 AQSIFEKLSFH 392
           A+ I  ++  H
Sbjct: 131 AEQIHARIICH 141



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 34/120 (28%), Positives = 59/120 (49%)
 Frame = +3

Query: 12  LLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNLSET 191
           LL AC  +G++   + L + V+++G+  D     A L+D+Y+   DI  A  +F      
Sbjct: 320 LLSACASNGALCKGEQLHSYVIKAGISSDMIVEGA-LLDLYVNCSDIKTAHEMFLTAQTE 378

Query: 192 SVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCSESGGISLAQSI 371
           +V  WN +L  F       +   +F R +   G+ PN  T+ ++LR C+  G + L + I
Sbjct: 379 NVVLWNVMLVAFGKLDNLSESFRIF-RQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQI 437



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 31/112 (27%), Positives = 60/112 (53%)
 Frame = +3

Query: 3   YIWLLKACFEHGSVRDAKTLQAKVLRSGLHGDSTYLSAQLIDVYLRHGDINYAVNIFDNL 182
           Y  +L+ C   G++   + +  +V+++G   +  Y+ + LID+Y +HG ++ A  I   L
Sbjct: 418 YPSILRTCTSVGALDLGEQIHTQVIKTGFQFN-VYVCSVLIDMYAKHGKLDTAHVILRTL 476

Query: 183 SETSVYSWNAILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCS 338
           +E  V SW A++S +    L+ + L  F  +L   GI  +N  F++ +  C+
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKHFKEML-NRGIQSDNIGFSSAISACA 527