BLASTX nr result
ID: Coptis24_contig00027774
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027774 (429 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein,... 116 1e-28 ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|2... 116 1e-28 ref|XP_003589961.1| NADH-quinone oxidoreductase subunit F [Medic... 112 1e-27 gb|ACL53142.1| unknown [Zea mays] gi|414591037|tpg|DAA41608.1| T... 114 1e-27 ref|NP_001141093.1| uncharacterized protein LOC100273176 [Zea ma... 114 1e-27 >ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] gi|223546006|gb|EEF47509.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] Length = 486 Score = 116 bits (291), Expect(2) = 1e-28 Identities = 65/94 (69%), Positives = 68/94 (72%), Gaps = 17/94 (18%) Frame = -2 Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIA YFYKHESCGQCT C EGT LWMI+E Sbjct: 361 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 420 Query: 245 KL----------------TKQIVVHTICALGNTA 192 +L TKQI HTICALG+ A Sbjct: 421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 454 Score = 35.0 bits (79), Expect(2) = 1e-28 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = -3 Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116 +Q +IRHF+P+ +RRIKE A R LL Sbjct: 458 VQGLIRHFRPELERRIKERAERELL 482 >ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|222864662|gb|EEF01793.1| predicted protein [Populus trichocarpa] Length = 485 Score = 116 bits (290), Expect(2) = 1e-28 Identities = 65/94 (69%), Positives = 68/94 (72%), Gaps = 17/94 (18%) Frame = -2 Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIA YFYKHESCGQCT C EGT LWMI+E Sbjct: 360 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 419 Query: 245 KL----------------TKQIVVHTICALGNTA 192 +L TKQI HTICALG+ A Sbjct: 420 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 453 Score = 35.0 bits (79), Expect(2) = 1e-28 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = -3 Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116 +Q +IRHF+P+ +RRIKE A R LL Sbjct: 457 VQGLIRHFRPELERRIKERAERELL 481 >ref|XP_003589961.1| NADH-quinone oxidoreductase subunit F [Medicago truncatula] gi|355479009|gb|AES60212.1| NADH-quinone oxidoreductase subunit F [Medicago truncatula] Length = 568 Score = 112 bits (281), Expect(2) = 1e-27 Identities = 63/94 (67%), Positives = 67/94 (71%), Gaps = 17/94 (18%) Frame = -2 Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246 DYDALKAV SGLGTAAVIVMDKSTDVVDAIA YFYKHESCGQCT C EGT LWMI+E Sbjct: 365 DYDALKAVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 424 Query: 245 KL----------------TKQIVVHTICALGNTA 192 ++ TKQI HTICALG+ A Sbjct: 425 RMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 458 Score = 35.4 bits (80), Expect(2) = 1e-27 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = -3 Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116 +Q +IRHF+P+ +RRIKE+A R LL Sbjct: 462 VQGLIRHFRPELERRIKENAQRELL 486 >gb|ACL53142.1| unknown [Zea mays] gi|414591037|tpg|DAA41608.1| TPA: NADH-ubiquinone oxidoreductase subunit [Zea mays] Length = 504 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 64/94 (68%), Positives = 67/94 (71%), Gaps = 17/94 (18%) Frame = -2 Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246 DYDALKAV SGLGTAAVIVMDKSTDVVDAIA YFYKHESCGQCT C EGT LWMI+E Sbjct: 379 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 438 Query: 245 KL----------------TKQIVVHTICALGNTA 192 +L TKQI HTICALG+ A Sbjct: 439 RLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAA 472 Score = 33.9 bits (76), Expect(2) = 1e-27 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = -3 Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116 +Q +IRHF+P+ +RRI+E A R LL Sbjct: 476 VQGLIRHFRPELERRIRERAERELL 500 >ref|NP_001141093.1| uncharacterized protein LOC100273176 [Zea mays] gi|194702602|gb|ACF85385.1| unknown [Zea mays] Length = 504 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 64/94 (68%), Positives = 67/94 (71%), Gaps = 17/94 (18%) Frame = -2 Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246 DYDALKAV SGLGTAAVIVMDKSTDVVDAIA YFYKHESCGQCT C EGT LWMI+E Sbjct: 379 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 438 Query: 245 KL----------------TKQIVVHTICALGNTA 192 +L TKQI HTICALG+ A Sbjct: 439 RLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAA 472 Score = 33.9 bits (76), Expect(2) = 1e-27 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = -3 Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116 +Q +IRHF+P+ +RRI+E A R LL Sbjct: 476 VQGLIRHFRPELERRIRERAERELL 500