BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027774
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein,...   116   1e-28
ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|2...   116   1e-28
ref|XP_003589961.1| NADH-quinone oxidoreductase subunit F [Medic...   112   1e-27
gb|ACL53142.1| unknown [Zea mays] gi|414591037|tpg|DAA41608.1| T...   114   1e-27
ref|NP_001141093.1| uncharacterized protein LOC100273176 [Zea ma...   114   1e-27

>ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus
           communis] gi|223546006|gb|EEF47509.1| NADH-ubiquinone
           oxidoreductase flavoprotein, putative [Ricinus communis]
          Length = 486

 Score =  116 bits (291), Expect(2) = 1e-28
 Identities = 65/94 (69%), Positives = 68/94 (72%), Gaps = 17/94 (18%)
 Frame = -2

Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246
           DYDALKAVTSGLGTAAVIVMDKSTDVVDAIA   YFYKHESCGQCT C EGT  LWMI+E
Sbjct: 361 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 420

Query: 245 KL----------------TKQIVVHTICALGNTA 192
           +L                TKQI  HTICALG+ A
Sbjct: 421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 454



 Score = 35.0 bits (79), Expect(2) = 1e-28
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -3

Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116
           +Q +IRHF+P+ +RRIKE A R LL
Sbjct: 458 VQGLIRHFRPELERRIKERAERELL 482


>ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|222864662|gb|EEF01793.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score =  116 bits (290), Expect(2) = 1e-28
 Identities = 65/94 (69%), Positives = 68/94 (72%), Gaps = 17/94 (18%)
 Frame = -2

Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246
           DYDALKAVTSGLGTAAVIVMDKSTDVVDAIA   YFYKHESCGQCT C EGT  LWMI+E
Sbjct: 360 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 419

Query: 245 KL----------------TKQIVVHTICALGNTA 192
           +L                TKQI  HTICALG+ A
Sbjct: 420 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 453



 Score = 35.0 bits (79), Expect(2) = 1e-28
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -3

Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116
           +Q +IRHF+P+ +RRIKE A R LL
Sbjct: 457 VQGLIRHFRPELERRIKERAERELL 481


>ref|XP_003589961.1| NADH-quinone oxidoreductase subunit F [Medicago truncatula]
           gi|355479009|gb|AES60212.1| NADH-quinone oxidoreductase
           subunit F [Medicago truncatula]
          Length = 568

 Score =  112 bits (281), Expect(2) = 1e-27
 Identities = 63/94 (67%), Positives = 67/94 (71%), Gaps = 17/94 (18%)
 Frame = -2

Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246
           DYDALKAV SGLGTAAVIVMDKSTDVVDAIA   YFYKHESCGQCT C EGT  LWMI+E
Sbjct: 365 DYDALKAVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 424

Query: 245 KL----------------TKQIVVHTICALGNTA 192
           ++                TKQI  HTICALG+ A
Sbjct: 425 RMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 458



 Score = 35.4 bits (80), Expect(2) = 1e-27
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = -3

Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116
           +Q +IRHF+P+ +RRIKE+A R LL
Sbjct: 462 VQGLIRHFRPELERRIKENAQRELL 486


>gb|ACL53142.1| unknown [Zea mays] gi|414591037|tpg|DAA41608.1| TPA:
           NADH-ubiquinone oxidoreductase subunit [Zea mays]
          Length = 504

 Score =  114 bits (285), Expect(2) = 1e-27
 Identities = 64/94 (68%), Positives = 67/94 (71%), Gaps = 17/94 (18%)
 Frame = -2

Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246
           DYDALKAV SGLGTAAVIVMDKSTDVVDAIA   YFYKHESCGQCT C EGT  LWMI+E
Sbjct: 379 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 438

Query: 245 KL----------------TKQIVVHTICALGNTA 192
           +L                TKQI  HTICALG+ A
Sbjct: 439 RLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAA 472



 Score = 33.9 bits (76), Expect(2) = 1e-27
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116
           +Q +IRHF+P+ +RRI+E A R LL
Sbjct: 476 VQGLIRHFRPELERRIRERAERELL 500


>ref|NP_001141093.1| uncharacterized protein LOC100273176 [Zea mays]
           gi|194702602|gb|ACF85385.1| unknown [Zea mays]
          Length = 504

 Score =  114 bits (285), Expect(2) = 1e-27
 Identities = 64/94 (68%), Positives = 67/94 (71%), Gaps = 17/94 (18%)
 Frame = -2

Query: 422 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIAS-PYFYKHESCGQCTLCIEGTILLWMIIE 246
           DYDALKAV SGLGTAAVIVMDKSTDVVDAIA   YFYKHESCGQCT C EGT  LWMI+E
Sbjct: 379 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 438

Query: 245 KL----------------TKQIVVHTICALGNTA 192
           +L                TKQI  HTICALG+ A
Sbjct: 439 RLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAA 472



 Score = 33.9 bits (76), Expect(2) = 1e-27
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 190 IQCIIRHFKPDFKRRIKEHANR*LL 116
           +Q +IRHF+P+ +RRI+E A R LL
Sbjct: 476 VQGLIRHFRPELERRIRERAERELL 500