BLASTX nr result

ID: Coptis24_contig00027703 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027703
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55590.1| hypothetical protein [Rosa rugosa]                      77   2e-12
ref|XP_002318466.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12
ref|XP_003602325.1| hypothetical protein MTR_3g092200 [Medicago ...    69   4e-10
ref|XP_002985519.1| hypothetical protein SELMODRAFT_13526 [Selag...    59   4e-07
ref|XP_002991958.1| hypothetical protein SELMODRAFT_2723 [Selagi...    59   4e-07

>gb|AFP55590.1| hypothetical protein [Rosa rugosa]
          Length = 333

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -3

Query: 173 GGDAILCTYPLFGTIIFGTFATAYILLFLLSSFKVVALVINKGLRIRIYALALSVLV 3
           G   +LC YPL  T+IFG FA  Y + FL S +KV+ALVINKGLR+RIYALA++VLV
Sbjct: 191 GNKVVLCKYPLLSTVIFGAFAVTYFMWFLFSLWKVLALVINKGLRMRIYALAVTVLV 247


>ref|XP_002318466.1| predicted protein [Populus trichocarpa] gi|222859139|gb|EEE96686.1|
           predicted protein [Populus trichocarpa]
          Length = 317

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 40/79 (50%), Positives = 48/79 (60%)
 Frame = -3

Query: 239 SKTHFPQVFWETYVVLKGSGVGGGDAILCTYPLFGTIIFGTFATAYILLFLLSSFKVVAL 60
           S    P +F  + VV K +   G + ++CTYPL   IIFG F   Y L F LS FKVV L
Sbjct: 162 SMVKMPSIFHRSSVVFKNNF--GVEIVMCTYPLISCIIFGAFGVWYTLFFFLSCFKVVTL 219

Query: 59  VINKGLRIRIYALALSVLV 3
            INKGLR RIY+LA  V+V
Sbjct: 220 AINKGLRARIYSLAFVVMV 238


>ref|XP_003602325.1| hypothetical protein MTR_3g092200 [Medicago truncatula]
           gi|355491373|gb|AES72576.1| hypothetical protein
           MTR_3g092200 [Medicago truncatula]
          Length = 329

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
 Frame = -3

Query: 344 IKQKDPNDKFGSAVATVXXXXXXXXXXXXXXXXXASKTH-FPQVFWETYVVLKGSGVGGG 168
           I++K PND  G AV  V                     H  P +  +T+V+L+       
Sbjct: 129 IRKKTPND--GWAVTFVFSTCLPLGILQGLLVYFNPLEHRVPALLRQTFVILED------ 180

Query: 167 DAILCTYPLFGTIIFGTFATAYILLFLLSSFKVVALVINKGLRIRIYALALSVLV 3
           D +LC YP   +++F  F+ AY    L S +KV++LVINKGLRIRIYAL   VLV
Sbjct: 181 DTVLCAYPFLNSVVFAAFSAAYCAWLLFSCWKVLSLVINKGLRIRIYALGSVVLV 235


>ref|XP_002985519.1| hypothetical protein SELMODRAFT_13526 [Selaginella moellendorffii]
           gi|300146725|gb|EFJ13393.1| hypothetical protein
           SELMODRAFT_13526 [Selaginella moellendorffii]
          Length = 320

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 37/52 (71%)
 Frame = -3

Query: 164 AILCTYPLFGTIIFGTFATAYILLFLLSSFKVVALVINKGLRIRIYALALSV 9
           A +CTYPL  T++ G F   Y++ FL   +K+ ALVIN+ L++R+YAL ++V
Sbjct: 212 AAVCTYPLLSTVVLGMFGCVYVIYFLYLGWKMAALVINRRLQLRVYALVIAV 263


>ref|XP_002991958.1| hypothetical protein SELMODRAFT_2723 [Selaginella moellendorffii]
           gi|300140200|gb|EFJ06926.1| hypothetical protein
           SELMODRAFT_2723 [Selaginella moellendorffii]
          Length = 320

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 37/52 (71%)
 Frame = -3

Query: 164 AILCTYPLFGTIIFGTFATAYILLFLLSSFKVVALVINKGLRIRIYALALSV 9
           A +CTYPL  T++ G F   Y++ FL   +K+ ALVIN+ L++R+YAL ++V
Sbjct: 212 AAVCTYPLLSTVVLGMFGCVYVIYFLYLGWKMAALVINRRLQLRVYALVIAV 263


Top