BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027670
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27010.3| unnamed protein product [Vitis vinifera]              149   2e-34
ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34
emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]   149   2e-34
ref|XP_002533966.1| pentatricopeptide repeat-containing protein,...   148   4e-34
ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containi...   144   7e-33

>emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  149 bits (377), Expect = 2e-34
 Identities = 67/104 (64%), Positives = 86/104 (82%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           AC+RLGAL LGKW+H YAES+GLK NV++GNAL+DMY++ G I+ A++VF GM  KDLI+
Sbjct: 182 ACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLIS 241

Query: 183 WNSMIGGLATHGRGTDALYIFEQMRNNGETPDRITFIGVLSACS 314
           WN++IGGLA H RG DAL +F QM+N G+ PD ITFIG+L AC+
Sbjct: 242 WNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT 285


>ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  149 bits (377), Expect = 2e-34
 Identities = 67/104 (64%), Positives = 86/104 (82%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           AC+RLGAL LGKW+H YAES+GLK NV++GNAL+DMY++ G I+ A++VF GM  KDLI+
Sbjct: 340 ACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLIS 399

Query: 183 WNSMIGGLATHGRGTDALYIFEQMRNNGETPDRITFIGVLSACS 314
           WN++IGGLA H RG DAL +F QM+N G+ PD ITFIG+L AC+
Sbjct: 400 WNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT 443



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/67 (37%), Positives = 40/67 (59%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           +C ++ AL  G+ +H +    G + N F+G  LIDMYS GG++  A  +F  M  ++++ 
Sbjct: 145 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 204

Query: 183 WNSMIGG 203
           W SMI G
Sbjct: 205 WTSMING 211


>emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  149 bits (377), Expect = 2e-34
 Identities = 67/104 (64%), Positives = 86/104 (82%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           AC+RLGAL LGKW+H YAES+GLK NV++GNAL+DMY++ G I+ A++VF GM  KDLI+
Sbjct: 403 ACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLIS 462

Query: 183 WNSMIGGLATHGRGTDALYIFEQMRNNGETPDRITFIGVLSACS 314
           WN++IGGLA H RG DAL +F QM+N G+ PD ITFIG+L AC+
Sbjct: 463 WNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT 506



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/67 (37%), Positives = 40/67 (59%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           +C ++ AL  G+ +H +    G + N F+G  LIDMYS GG++  A  +F  M  ++++ 
Sbjct: 208 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 267

Query: 183 WNSMIGG 203
           W SMI G
Sbjct: 268 WTSMING 274


>ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526049|gb|EEF28413.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score =  148 bits (374), Expect = 4e-34
 Identities = 65/104 (62%), Positives = 85/104 (81%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           AC+RLGAL LGKW+H YA+SNG K NV+IGNALIDMY++ G+++ A+ VF  +  KDLI+
Sbjct: 368 ACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLIS 427

Query: 183 WNSMIGGLATHGRGTDALYIFEQMRNNGETPDRITFIGVLSACS 314
           WN++IGGLA HGR  DALY+F +M++ GE PD ITF+GVL AC+
Sbjct: 428 WNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACT 471


>ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  144 bits (363), Expect = 7e-33
 Identities = 68/104 (65%), Positives = 82/104 (78%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           AC+RLGAL LGKW+H YA + G K ++++GNALIDMYS+ G I+ A+ VF  M LKDLIT
Sbjct: 327 ACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLIT 386

Query: 183 WNSMIGGLATHGRGTDALYIFEQMRNNGETPDRITFIGVLSACS 314
           WNSMI GLATHG G DAL +F QM+ NGE PD ITFIGVL +C+
Sbjct: 387 WNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCT 430



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 46/82 (56%)
 Frame = +3

Query: 3   ACSRLGALGLGKWIHTYAESNGLKENVFIGNALIDMYSRGGSIDTAVAVFNGMGLKDLIT 182
           +C+++GA   G+ IH      GL+ N F+   LID+YS G +I +A  +F GM  ++++ 
Sbjct: 132 SCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVA 191

Query: 183 WNSMIGGLATHGRGTDALYIFE 248
           W SMI G     R   A  +F+
Sbjct: 192 WTSMISGYILCNRVALARRLFD 213