BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027640
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
emb|CBI36868.3| unnamed protein product [Vitis vinifera]              102   3e-20
ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
gb|EAY99942.1| hypothetical protein OsI_21945 [Oryza sativa Indi...   100   1e-19
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar...   100   1e-19

>ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  102 bits (254), Expect = 3e-20
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
 Frame = +2

Query: 5   NSLSLSYSKHATITKPHFG--IHLHCHLIKFGFGSDAFLLTSLIA-YAKCGLPDEARCVF 175
           NS +L++   A      FG  + +H H++K GFGS  F+ TSL+  Y KC     AR VF
Sbjct: 91  NSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVF 150

Query: 176 YKIPERNAVSWAAVVSGYSQCGRHDEALSLFNETRRENVEPTEGMLIXXXXXXXXXXXXX 355
            ++P RN V+W A++SG+++ G  DEA+ LF E ++  ++P    L+             
Sbjct: 151 EEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALD 210

Query: 356 XXKWVHDYVKCNGILLTASIGTALLSMYAKCGC 454
              W+H Y++   +L    + TAL+ MYAKCGC
Sbjct: 211 IGYWLHAYIEKYFVLTDLELSTALVDMYAKCGC 243


>emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  102 bits (254), Expect = 3e-20
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
 Frame = +2

Query: 53  HFGIHLHCHLIKFGFGSDAFLLTSLIA-YAKCGLPDEARCVFYKIPERNAVSWAAVVSGY 229
           H G  +H  +++FG   D F+ TSLI+ Y+  GL D AR +F  +PERN +SW+ +++GY
Sbjct: 81  HLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGY 140

Query: 230 SQCGRHDEALSLFNETRR---ENVEPTEGMLIXXXXXXXXXXXXXXXKWVHDYVKCNGIL 400
            +CG++ EAL+LF E +     +V P E  +                KW H Y+   G+ 
Sbjct: 141 VRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMP 200

Query: 401 LTASIGTALLSMYAKCG 451
           +   +GTAL+ MYAKCG
Sbjct: 201 VDVVLGTALIDMYAKCG 217


>ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 376

 Score =  102 bits (253), Expect = 4e-20
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
 Frame = +2

Query: 5   NSLSLSYSKHATITKPHFG--IHLHCHLIKFGFGSDAFLLTSLIA-YAKCGLPDEARCVF 175
           NS +L++   A      FG  + +H H++K GFGS  F+ TSL+  Y KC     AR VF
Sbjct: 91  NSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVF 150

Query: 176 YKIPERNAVSWAAVVSGYSQCGRHDEALSLFNETRRENVEPTEGMLIXXXXXXXXXXXXX 355
            ++P RN V+W A++SG+++ G  DEA+ LF E ++  ++P    L+             
Sbjct: 151 EEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALD 210

Query: 356 XXKWVHDYVKCNGILLTASIGTALLSMYAKCGC 454
              W+H Y++   +L    + TAL+ MYAKCGC
Sbjct: 211 IGCWLHAYIEKYFVLTDLELSTALVDMYAKCGC 243


>gb|EAY99942.1| hypothetical protein OsI_21945 [Oryza sativa Indica Group]
          Length = 465

 Score =  100 bits (249), Expect = 1e-19
 Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
 Frame = +2

Query: 56  FGIHLHCHLIKFGFGSDAFLLTSLI-AYAKCGLPDEARCVFYKIPERNAVSWAAVVSGYS 232
           +G  LHC ++K G G+D F++ SL+  YAK G  + AR VF ++PERN VSW +++SG  
Sbjct: 144 YGRRLHCDVVKAG-GADGFVMNSLVDMYAKSGDLENARKVFDRVPERNVVSWTSMLSGSI 202

Query: 233 QCGRHDEALSLFNETRRENVEPTEGMLIXXXXXXXXXXXXXXXKWVHDYVKCNGILLTAS 412
           Q G  +E L LFNE R++NV P+E  ++               +W+H  V  +G+   + 
Sbjct: 203 QNGFAEEGLVLFNEMRKDNVHPSEYTMVSVLAACAMLGCLHQGRWIHGSVIKDGLSTNSF 262

Query: 413 IGTALLSMYAKC 448
           I  +LL MYAKC
Sbjct: 263 ISASLLDMYAKC 274


>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101013|sp|P93011.1|PP182_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 583

 Score =  100 bits (249), Expect = 1e-19
 Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
 Frame = +2

Query: 35  ATITKPHFGIHLHCHLIKFGFGSDAFLLTSLIA-YAKCGLPDEARCVFYKIPERNAVSWA 211
           A ++    G  +HCH +  GFG D ++  +L+  Y+KCG  + AR VF ++PE++ V+W 
Sbjct: 118 ADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWN 177

Query: 212 AVVSGYSQCGRHDEALSLFNETRRENVEPTEGMLIXXXXXXXXXXXXXXXKWVHDYVKCN 391
           ++VSG+ Q G  DEA+ +F + R    EP     +                WVH Y+   
Sbjct: 178 SLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE 237

Query: 392 GILLTASIGTALLSMYAKCG 451
           G+ L   +GTAL+++Y++CG
Sbjct: 238 GLDLNVKLGTALINLYSRCG 257