BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027637
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   188   3e-46
gb|ABR18382.1| unknown [Picea sitchensis]                             178   5e-43
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...   175   3e-42
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   174   5e-42
ref|XP_002318955.1| predicted protein [Populus trichocarpa] gi|2...   163   2e-38

>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 321

 Score =  188 bits (478), Expect = 3e-46
 Identities = 91/118 (77%), Positives = 101/118 (85%), Gaps = 2/118 (1%)
 Frame = -3

Query: 350 IFEDEWLIVVNKPQGVYCENVLSSIPQLLIASAD--SPVPITENNTLELHLANRLDRDTS 177
           ++ED+WLI VNKPQGVYCE VL S+P++L ASA+   P    E N  E HLANRLDRDTS
Sbjct: 60  LYEDQWLIAVNKPQGVYCETVLESVPRVLAASAELTDPSEGAEGNPHEFHLANRLDRDTS 119

Query: 176 GLMVITKSHKVAGKLVKAFTDHKIRKTYIALCIGLVPKWEKISIKSGHGRSKFGVWRV 3
           G+MVITKSHKVA KLVKAFTDHKI+KTYIALCIGL PKWEKI+IKSGHGRSKFGVWRV
Sbjct: 120 GVMVITKSHKVASKLVKAFTDHKIKKTYIALCIGLAPKWEKITIKSGHGRSKFGVWRV 177


>gb|ABR18382.1| unknown [Picea sitchensis]
          Length = 358

 Score =  178 bits (451), Expect = 5e-43
 Identities = 84/116 (72%), Positives = 96/116 (82%)
 Frame = -3

Query: 350 IFEDEWLIVVNKPQGVYCENVLSSIPQLLIASADSPVPITENNTLELHLANRLDRDTSGL 171
           I+EDEW+I VNKP GVYCE+VLSSIP+LL +S  S     + N LELHLANRLDRDTSG+
Sbjct: 65  IYEDEWMIAVNKPSGVYCEHVLSSIPELLASSPSSAGAANDVNPLELHLANRLDRDTSGV 124

Query: 170 MVITKSHKVAGKLVKAFTDHKIRKTYIALCIGLVPKWEKISIKSGHGRSKFGVWRV 3
           MVITK HK+AG+LVKAFTD K+RKTY+ALCIG  PKW  I I+SGHGRSKFG WRV
Sbjct: 125 MVITKLHKIAGQLVKAFTDRKVRKTYLALCIGPAPKWNNIYIESGHGRSKFGAWRV 180


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score =  175 bits (444), Expect = 3e-42
 Identities = 82/116 (70%), Positives = 100/116 (86%)
 Frame = -3

Query: 350 IFEDEWLIVVNKPQGVYCENVLSSIPQLLIASADSPVPITENNTLELHLANRLDRDTSGL 171
           I+EDEWLI VNKPQG+YCENVL+++P+LL  SA++ +   + +  ELHLANRLDRDTSG+
Sbjct: 95  IYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANAGI---KTSLPELHLANRLDRDTSGV 151

Query: 170 MVITKSHKVAGKLVKAFTDHKIRKTYIALCIGLVPKWEKISIKSGHGRSKFGVWRV 3
           MVITKSHKVA KLVKAFTDH + K+YIA C+G  PKW+KI++KSGHGRSKFGVWRV
Sbjct: 152 MVITKSHKVASKLVKAFTDHTVSKSYIAFCVGTSPKWKKINVKSGHGRSKFGVWRV 207


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
           [Cucumis sativus]
          Length = 366

 Score =  174 bits (442), Expect = 5e-42
 Identities = 82/116 (70%), Positives = 99/116 (85%)
 Frame = -3

Query: 350 IFEDEWLIVVNKPQGVYCENVLSSIPQLLIASADSPVPITENNTLELHLANRLDRDTSGL 171
           I+EDEWLI VNKPQG+YCENVL+++P+LL  SA++ +   + +  ELHLANRLDRDTSG+
Sbjct: 95  IYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANAGI---KTSLPELHLANRLDRDTSGV 151

Query: 170 MVITKSHKVAGKLVKAFTDHKIRKTYIALCIGLVPKWEKISIKSGHGRSKFGVWRV 3
           MVITKSHKVA KLVKAFTDH + K+YIA C+G  PKW KI++KSGHGRSKFGVWRV
Sbjct: 152 MVITKSHKVASKLVKAFTDHTVSKSYIAFCVGTSPKWXKINVKSGHGRSKFGVWRV 207


>ref|XP_002318955.1| predicted protein [Populus trichocarpa] gi|222857331|gb|EEE94878.1|
           predicted protein [Populus trichocarpa]
          Length = 261

 Score =  163 bits (412), Expect = 2e-38
 Identities = 80/116 (68%), Positives = 89/116 (76%)
 Frame = -3

Query: 350 IFEDEWLIVVNKPQGVYCENVLSSIPQLLIASADSPVPITENNTLELHLANRLDRDTSGL 171
           +++D+WLI VNKPQGVYCE VL S+PQL                   HLANRLDRDTSG+
Sbjct: 18  LYQDQWLIAVNKPQGVYCETVLDSVPQL-------------------HLANRLDRDTSGV 58

Query: 170 MVITKSHKVAGKLVKAFTDHKIRKTYIALCIGLVPKWEKISIKSGHGRSKFGVWRV 3
           MVITK HKVA KLVKAFTDHK+RKTYIALCIG  PKWEKI+IKSGHGRSKFG +RV
Sbjct: 59  MVITKLHKVASKLVKAFTDHKVRKTYIALCIGSAPKWEKITIKSGHGRSKFGAFRV 114