BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027634
         (1144 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pen...   353   6e-95
emb|CBI17645.3| unnamed protein product [Vitis vinifera]              353   6e-95
emb|CAN82640.1| hypothetical protein VITISV_028821 [Vitis vinifera]   353   6e-95
ref|XP_002514857.1| pentatricopeptide repeat-containing protein,...   338   1e-90
ref|XP_002325903.1| predicted membrane protein [Populus trichoca...   332   1e-88

>ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  353 bits (905), Expect = 6e-95
 Identities = 195/254 (76%), Positives = 205/254 (80%)
 Frame = -2

Query: 987 DLGRRSKIVLEXXXXXXXXXDPELAVLKDTRHLDLSDTVGLGILDAFFASLSMILVSEIG 808
           DLGRRSKIVLE           +     D+  LDLS   GLG+ DAFFASLSMI+VSEIG
Sbjct: 42  DLGRRSKIVLEDLEVETTGDKKD----PDSISLDLSLDSGLGVFDAFFASLSMIIVSEIG 97

Query: 807 DETFIIAALMAMRHPKSIVLSGALSALVVMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 628
           DETFIIAALMAMRHPKSIVLSGALSAL+VMTVLSTGLGRIVPNLISRKHTNSAATVLYAF
Sbjct: 98  DETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 157

Query: 627 FGLRLLYIAWRSDSKASQXXXXXXXXXXXETQQGKTASRRFFSRFCTPIFLESFVLTFLA 448
           FGLRLLYIAWRSDSKASQ           E+ QGKT+ RRFFSRFCTPIFLESF+LTFLA
Sbjct: 158 FGLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLESFILTFLA 217

Query: 447 EWGDRSQIATIALATHKNAIGVAVGATLGHTICTSIAVVGGSMLASKISQGTVATVXXXX 268
           EWGDRSQIATIALATHKNAIGVAVGAT+GHTICTS+AVVGGSMLASKISQGTVATV    
Sbjct: 218 EWGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATVGGLL 277

Query: 267 XXXXXXXXXXYPPL 226
                     YPPL
Sbjct: 278 FLGFSLSSYFYPPL 291


>emb|CBI17645.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score =  353 bits (905), Expect = 6e-95
 Identities = 195/254 (76%), Positives = 205/254 (80%)
 Frame = -2

Query: 987 DLGRRSKIVLEXXXXXXXXXDPELAVLKDTRHLDLSDTVGLGILDAFFASLSMILVSEIG 808
           DLGRRSKIVLE           +     D+  LDLS   GLG+ DAFFASLSMI+VSEIG
Sbjct: 42  DLGRRSKIVLEDLEVETTGDKKD----PDSISLDLSLDSGLGVFDAFFASLSMIIVSEIG 97

Query: 807 DETFIIAALMAMRHPKSIVLSGALSALVVMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 628
           DETFIIAALMAMRHPKSIVLSGALSAL+VMTVLSTGLGRIVPNLISRKHTNSAATVLYAF
Sbjct: 98  DETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 157

Query: 627 FGLRLLYIAWRSDSKASQXXXXXXXXXXXETQQGKTASRRFFSRFCTPIFLESFVLTFLA 448
           FGLRLLYIAWRSDSKASQ           E+ QGKT+ RRFFSRFCTPIFLESF+LTFLA
Sbjct: 158 FGLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLESFILTFLA 217

Query: 447 EWGDRSQIATIALATHKNAIGVAVGATLGHTICTSIAVVGGSMLASKISQGTVATVXXXX 268
           EWGDRSQIATIALATHKNAIGVAVGAT+GHTICTS+AVVGGSMLASKISQGTVATV    
Sbjct: 218 EWGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATVGGLL 277

Query: 267 XXXXXXXXXXYPPL 226
                     YPPL
Sbjct: 278 FLGFSLSSYFYPPL 291


>emb|CAN82640.1| hypothetical protein VITISV_028821 [Vitis vinifera]
          Length = 291

 Score =  353 bits (905), Expect = 6e-95
 Identities = 195/254 (76%), Positives = 205/254 (80%)
 Frame = -2

Query: 987 DLGRRSKIVLEXXXXXXXXXDPELAVLKDTRHLDLSDTVGLGILDAFFASLSMILVSEIG 808
           DLGRRSKIVLE           +     D+  LDLS   GLG+ DAFFASLSMI+VSEIG
Sbjct: 42  DLGRRSKIVLEDLEVETTGDKKD----PDSISLDLSLDSGLGVFDAFFASLSMIIVSEIG 97

Query: 807 DETFIIAALMAMRHPKSIVLSGALSALVVMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 628
           DETFIIAALMAMRHPKSIVLSGALSAL+VMTVLSTGLGRIVPNLISRKHTNSAATVLYAF
Sbjct: 98  DETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 157

Query: 627 FGLRLLYIAWRSDSKASQXXXXXXXXXXXETQQGKTASRRFFSRFCTPIFLESFVLTFLA 448
           FGLRLLYIAWRSDSKASQ           E+ QGKT+ RRFFSRFCTPIFLESF+LTFLA
Sbjct: 158 FGLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLESFILTFLA 217

Query: 447 EWGDRSQIATIALATHKNAIGVAVGATLGHTICTSIAVVGGSMLASKISQGTVATVXXXX 268
           EWGDRSQIATIALATHKNAIGVAVGAT+GHTICTS+AVVGGSMLASKISQGTVATV    
Sbjct: 218 EWGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATVGGLL 277

Query: 267 XXXXXXXXXXYPPL 226
                     YPPL
Sbjct: 278 FLGFSLSSYFYPPL 291


>ref|XP_002514857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545908|gb|EEF47411.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 832

 Score =  338 bits (868), Expect = 1e-90
 Identities = 189/266 (71%), Positives = 206/266 (77%)
 Frame = -2

Query: 993 LRDLGRRSKIVLEXXXXXXXXXDPELAVLKDTRHLDLSDTVGLGILDAFFASLSMILVSE 814
           ++DLGRR  IV +                 ++ +L L    GLG+ DAF ASLSMI+VSE
Sbjct: 41  IKDLGRRGMIVTKDIDG-------------NSVNLGLHVDSGLGVFDAFIASLSMIIVSE 87

Query: 813 IGDETFIIAALMAMRHPKSIVLSGALSALVVMTVLSTGLGRIVPNLISRKHTNSAATVLY 634
           IGDETFIIAALMAMRHPKSIVLSGAL+AL+VMTVLSTGLGRIVPNLISRKHTNSAATVLY
Sbjct: 88  IGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGLGRIVPNLISRKHTNSAATVLY 147

Query: 633 AFFGLRLLYIAWRSDSKASQXXXXXXXXXXXETQQGKTASRRFFSRFCTPIFLESFVLTF 454
           AFFGLRLLYIAWRSDSK SQ           E+ QGKT  RRFFSRFCTPIFLESF+LTF
Sbjct: 148 AFFGLRLLYIAWRSDSKVSQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTF 207

Query: 453 LAEWGDRSQIATIALATHKNAIGVAVGATLGHTICTSIAVVGGSMLASKISQGTVATVXX 274
           LAEWGDRSQIATIALATHKNAIGVAVGAT+GHTICTS+AVVGGSMLASKISQGTVAT+  
Sbjct: 208 LAEWGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQGTVATIGG 267

Query: 273 XXXXXXXXXXXXYPPL*LHQSLNETY 196
                       YPPL L QSL+ +Y
Sbjct: 268 LLFLGFSLSSYFYPPLFL-QSLSSSY 292


>ref|XP_002325903.1| predicted membrane protein [Populus trichocarpa]
           gi|222862778|gb|EEF00285.1| predicted membrane protein
           [Populus trichocarpa]
          Length = 284

 Score =  332 bits (850), Expect = 1e-88
 Identities = 176/215 (81%), Positives = 185/215 (86%)
 Frame = -2

Query: 870 GLGILDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALVVMTVLSTGLGR 691
           GLGI DAFFASLSMILVSEIGDETFIIAALMAMRHPKS VLSGAL+AL+VMTVLSTGLGR
Sbjct: 70  GLGIFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALTALIVMTVLSTGLGR 129

Query: 690 IVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQXXXXXXXXXXXETQQGKTASR 511
           IVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSK+SQ           E  QGKT+ R
Sbjct: 130 IVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKSSQKKEMEEVEEKLEAGQGKTSFR 189

Query: 510 RFFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAIGVAVGATLGHTICTSIAVV 331
           R+FSRFCTPIFLESF+LTFLAEWGDRSQIATIALATHKNAIGVAVGATLGHTICTS+AVV
Sbjct: 190 RYFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAVGATLGHTICTSLAVV 249

Query: 330 GGSMLASKISQGTVATVXXXXXXXXXXXXXXYPPL 226
           GGS+LASKISQGTVAT+              YPPL
Sbjct: 250 GGSLLASKISQGTVATIGGLLFLCFSLSSYFYPPL 284