BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027579
         (954 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283664.2| PREDICTED: ribosomal RNA small subunit methy...   366   4e-99
ref|XP_002318633.1| predicted protein [Populus trichocarpa] gi|2...   357   2e-96
ref|XP_002511459.1| Methyltransferase gidB, putative [Ricinus co...   347   2e-93
ref|XP_004152459.1| PREDICTED: ribosomal RNA small subunit methy...   342   6e-92
ref|XP_003608919.1| Ribosomal RNA small subunit methyltransferas...   325   1e-86

>ref|XP_002283664.2| PREDICTED: ribosomal RNA small subunit methyltransferase G-like
           [Vitis vinifera] gi|297733841|emb|CBI15088.3| unnamed
           protein product [Vitis vinifera]
          Length = 285

 Score =  366 bits (940), Expect = 4e-99
 Identities = 186/273 (68%), Positives = 216/273 (79%), Gaps = 6/273 (2%)
 Frame = -3

Query: 937 LSLPTFIKHLTPA------PHFSTSRPNLTTSCSNQVSPLLQTLNSRQKEQISLYINVLQ 776
           LS+ TF+K +T +      PH   ++   TT   N  S   +TLN  QK+QISLY++ L 
Sbjct: 15  LSVGTFVKQVTTSISTRFRPHRIATKTLTTTKVLN--SSYFETLNPLQKQQISLYVDALL 72

Query: 775 EWNKKMNLTAVTETNEVMKRHVEDSLAIIPPIQNSYTSHCQSSYENINLVDVGSGAGLPG 596
           +WN+KMNLTAVT+ +EVM+RHV DSLA+IPPIQ+SY +HC SS  NI+LVDVGSG GLPG
Sbjct: 73  QWNQKMNLTAVTKADEVMERHVGDSLAMIPPIQSSYIAHCDSSCNNISLVDVGSGPGLPG 132

Query: 595 LIFAIACPGWKVTLLESMNKRCLFLEHAVSVTGLSNVEVLRGRAENVGQNLDFREVFDXX 416
           LI AIACP WK+TLLESMNKRC+FLEHAVS+TGLSNV+V+RGRAEN+GQN+ FREVFD  
Sbjct: 133 LILAIACPSWKITLLESMNKRCIFLEHAVSLTGLSNVQVVRGRAENLGQNIGFREVFDVA 192

Query: 415 XXXXXXXXXXXXEYCLPLVRVGGLFIAAKGHDPQEEVRNAGRAITLLGASVLQLSSVESH 236
                       EYCLPLVRVGGLF+AAKGHDPQEEVRNA RAI L+GASVLQL SVESH
Sbjct: 193 VARAVAEMRILAEYCLPLVRVGGLFLAAKGHDPQEEVRNAERAIQLMGASVLQLCSVESH 252

Query: 235 SPYGQRTAVVCLKDRPTPRKYPRDPGTPAKVPL 137
           SP+GQRTA+VCLKD PTPRKYPRDPGTP K PL
Sbjct: 253 SPFGQRTAIVCLKDCPTPRKYPRDPGTPVKSPL 285


>ref|XP_002318633.1| predicted protein [Populus trichocarpa] gi|222859306|gb|EEE96853.1|
           predicted protein [Populus trichocarpa]
          Length = 288

 Score =  357 bits (917), Expect = 2e-96
 Identities = 177/274 (64%), Positives = 208/274 (75%), Gaps = 7/274 (2%)
 Frame = -3

Query: 937 LSLPTFIKHLT-------PAPHFSTSRPNLTTSCSNQVSPLLQTLNSRQKEQISLYINVL 779
           LSL TF+KH +       P             S     S    + + RQK+QI LY++ L
Sbjct: 15  LSLGTFVKHFSVIEPKAFPLHRIKAKSLTAAASIGTHNSSCFDSFSCRQKKQIRLYVDTL 74

Query: 778 QEWNKKMNLTAVTETNEVMKRHVEDSLAIIPPIQNSYTSHCQSSYENINLVDVGSGAGLP 599
            +WN+KMNLTAVT+ +EVM+RH+EDSLAI+PPIQ+SY SHC +S ++I LVDVG+GAGLP
Sbjct: 75  LQWNQKMNLTAVTDVDEVMERHIEDSLAILPPIQDSYVSHCNASIDSIKLVDVGTGAGLP 134

Query: 598 GLIFAIACPGWKVTLLESMNKRCLFLEHAVSVTGLSNVEVLRGRAENVGQNLDFREVFDX 419
           GL+ AIACP WKVTLLESMNKRC FLEHA+SVTGLSNVEV+RGRAEN+GQN+ FRE FD 
Sbjct: 135 GLVLAIACPAWKVTLLESMNKRCDFLEHAISVTGLSNVEVVRGRAENLGQNVSFREKFDV 194

Query: 418 XXXXXXXXXXXXXEYCLPLVRVGGLFIAAKGHDPQEEVRNAGRAITLLGASVLQLSSVES 239
                        EYCLPLVRVGGLFIAAKGHDPQEEVRNA R++ L+G+S LQL SVES
Sbjct: 195 AVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPQEEVRNAERSLKLMGSSTLQLCSVES 254

Query: 238 HSPYGQRTAVVCLKDRPTPRKYPRDPGTPAKVPL 137
            SPYGQRTA++C KDRPTPRKYPRDPGTPAK+PL
Sbjct: 255 RSPYGQRTAIICSKDRPTPRKYPRDPGTPAKLPL 288


>ref|XP_002511459.1| Methyltransferase gidB, putative [Ricinus communis]
           gi|223550574|gb|EEF52061.1| Methyltransferase gidB,
           putative [Ricinus communis]
          Length = 282

 Score =  347 bits (890), Expect = 2e-93
 Identities = 173/237 (72%), Positives = 195/237 (82%)
 Frame = -3

Query: 868 TTSCSNQVSPLLQTLNSRQKEQISLYINVLQEWNKKMNLTAVTETNEVMKRHVEDSLAII 689
           TTSC        ++LNSRQKEQI  Y++ L EWN+KMNLTAVTE NEVM+RH+EDSLA++
Sbjct: 48  TTSC-------FESLNSRQKEQIRHYVDALLEWNQKMNLTAVTEANEVMRRHIEDSLAML 100

Query: 688 PPIQNSYTSHCQSSYENINLVDVGSGAGLPGLIFAIACPGWKVTLLESMNKRCLFLEHAV 509
            PI+ SY SHC SS +N+ LVDVG+G GLPGLI AIACPGWKVTLLESMNKRC+FLEHAV
Sbjct: 101 TPIRKSYISHCSSSIDNLKLVDVGTGPGLPGLILAIACPGWKVTLLESMNKRCVFLEHAV 160

Query: 508 SVTGLSNVEVLRGRAENVGQNLDFREVFDXXXXXXXXXXXXXXEYCLPLVRVGGLFIAAK 329
           +VTGLSNVEVLRGRAE++GQN  FRE FD              EYCLPLVRVGGLFIAAK
Sbjct: 161 NVTGLSNVEVLRGRAESLGQNDSFREQFDVAVARAVAEMRVLAEYCLPLVRVGGLFIAAK 220

Query: 328 GHDPQEEVRNAGRAITLLGASVLQLSSVESHSPYGQRTAVVCLKDRPTPRKYPRDPG 158
           GHDPQEEVRNA R+I L+GASVLQL SVESHSPYGQRTA++ +KDRPTPRKYPRDPG
Sbjct: 221 GHDPQEEVRNAERSIQLMGASVLQLCSVESHSPYGQRTAIISVKDRPTPRKYPRDPG 277


>ref|XP_004152459.1| PREDICTED: ribosomal RNA small subunit methyltransferase G-like
           [Cucumis sativus] gi|449527787|ref|XP_004170891.1|
           PREDICTED: ribosomal RNA small subunit methyltransferase
           G-like [Cucumis sativus]
          Length = 281

 Score =  342 bits (878), Expect = 6e-92
 Identities = 174/276 (63%), Positives = 208/276 (75%), Gaps = 8/276 (2%)
 Frame = -3

Query: 940 SLSLPTFIKHLTPAPH-------FSTSRPNLTTSCSNQVSPLLQTLNSRQKEQISLYINV 782
           S SL TFIK  +P P          TS   LT +C++      +TL SRQK+Q+ L+++ 
Sbjct: 6   SFSLRTFIKQFSPLPKRTPFSFPIRTSFKRLTVTCNSSRFLHFETLTSRQKDQVHLFVDA 65

Query: 781 LQEWNKKMNLTAVTETNEVMKRHVEDSLAIIPPIQNSYTSHCQSS-YENINLVDVGSGAG 605
           L +WN+KMNLTA+TE NEVM+RHVEDSLAIIPPI+N Y SHC +S  ++I LVDVG+GAG
Sbjct: 66  LLQWNQKMNLTAITEVNEVMERHVEDSLAIIPPIRNLYMSHCSTSPCDDIKLVDVGTGAG 125

Query: 604 LPGLIFAIACPGWKVTLLESMNKRCLFLEHAVSVTGLSNVEVLRGRAENVGQNLDFREVF 425
           LPGLI AIACP W+VTL+ESMNKRCLFLEHAV  TGL+NV+V+RGRAEN+G +L  RE F
Sbjct: 126 LPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAENLGHDLSLREKF 185

Query: 424 DXXXXXXXXXXXXXXEYCLPLVRVGGLFIAAKGHDPQEEVRNAGRAITLLGASVLQLSSV 245
           D              EYCLP+VRVGGLF+AAKGHDP  EV NA +AI ++GAS+LQ+  V
Sbjct: 186 DVVVARAVAEMRILAEYCLPMVRVGGLFLAAKGHDPLAEVTNAEKAIEMMGASLLQICPV 245

Query: 244 ESHSPYGQRTAVVCLKDRPTPRKYPRDPGTPAKVPL 137
           ESHSPYGQRTAVVC K+R TPRKYPRDPGTPAK PL
Sbjct: 246 ESHSPYGQRTAVVCFKERHTPRKYPRDPGTPAKSPL 281


>ref|XP_003608919.1| Ribosomal RNA small subunit methyltransferase G [Medicago truncatula]
            gi|355509974|gb|AES91116.1| Ribosomal RNA small subunit
            methyltransferase G [Medicago truncatula]
          Length = 518

 Score =  325 bits (833), Expect = 1e-86
 Identities = 160/265 (60%), Positives = 201/265 (75%)
 Frame = -3

Query: 925  TFIKHLTPAPHFSTSRPNLTTSCSNQVSPLLQTLNSRQKEQISLYINVLQEWNKKMNLTA 746
            TF KHLTP  + +  + N T++ S+ +     TL SRQK+QI LY++ L +WNK+MNLTA
Sbjct: 248  TFFKHLTPRKYTTLCQNNSTSNLSHFL-----TLTSRQKDQIHLYVDTLLQWNKRMNLTA 302

Query: 745  VTETNEVMKRHVEDSLAIIPPIQNSYTSHCQSSYENINLVDVGSGAGLPGLIFAIACPGW 566
            V E NEVM+RH+EDSLAI+PP+ ++Y SH   S + + LVDVG+GAGLPG++ AIA P W
Sbjct: 303  VKEVNEVMERHIEDSLAILPPLSDNYMSHSSKSIDKVKLVDVGTGAGLPGVVLAIARPDW 362

Query: 565  KVTLLESMNKRCLFLEHAVSVTGLSNVEVLRGRAENVGQNLDFREVFDXXXXXXXXXXXX 386
             VTL+ESMNKRC+FLEH V V G SN++++RGRAE++GQNL +RE FD            
Sbjct: 363  DVTLMESMNKRCVFLEHVVGVIGSSNLQIVRGRAESLGQNLCYREKFDIAVARAVAETRV 422

Query: 385  XXEYCLPLVRVGGLFIAAKGHDPQEEVRNAGRAITLLGASVLQLSSVESHSPYGQRTAVV 206
              EYCLPLVRVGG+FIAAKGHDP++EV+ A  AI  +GAS+LQ+ SVES SPYGQRTAV+
Sbjct: 423  LAEYCLPLVRVGGMFIAAKGHDPEDEVKKAENAIKKMGASLLQVCSVESQSPYGQRTAVI 482

Query: 205  CLKDRPTPRKYPRDPGTPAKVPL*K 131
            CLKDRPTP KYPR PGTP+K PL K
Sbjct: 483  CLKDRPTPMKYPRFPGTPSKEPLTK 507