BLASTX nr result

ID: Coptis24_contig00027573 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027573
         (747 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17926.3| unnamed protein product [Vitis vinifera]               89   5e-39
emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]    89   6e-39
ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi...    58   3e-17
tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea m...    74   2e-16
ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea ma...    74   2e-16

>emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score = 88.6 bits (218), Expect(3) = 5e-39
 Identities = 39/73 (53%), Positives = 53/73 (72%)
 Frame = -2

Query: 305 DSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMIGG 126
           + GS D A R F E   +N+VVWNTMIHQ V+H NL   + LF++MPD+DVVSWN MIGG
Sbjct: 239 ECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGG 298

Query: 125 LSQMGQSKEVIVF 87
            +++GQ +E + +
Sbjct: 299 FARIGQYQEALTW 311



 Score = 79.7 bits (195), Expect(3) = 5e-39
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = -3

Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMHG 347
           L+LWT +IRAYVC   P + L +FR  RE G+ PD VA++T+ SAC  LG+L +AK MH 
Sbjct: 157 LVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHC 216

Query: 346 FISKADI 326
           FI K+ I
Sbjct: 217 FIEKSGI 223



 Score = 40.0 bits (92), Expect(3) = 5e-39
 Identities = 20/37 (54%), Positives = 22/37 (59%)
 Frame = -1

Query: 639 EVDSGGETVAHVVKFGNECSQFVCSVLLGFYVGCRCV 529
           EV  G E  A VV+ G  CS+FV   LLGFYV C  V
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLV 142


>emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score = 88.6 bits (218), Expect(3) = 6e-39
 Identities = 39/73 (53%), Positives = 53/73 (72%)
 Frame = -2

Query: 305 DSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMIGG 126
           + GS D A R F E   +N+VVWNTMIHQ V+H NL   + LF++MPD+DVVSWN MIGG
Sbjct: 239 ECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGG 298

Query: 125 LSQMGQSKEVIVF 87
            +++GQ +E + +
Sbjct: 299 FARIGQYQEALTW 311



 Score = 79.3 bits (194), Expect(3) = 6e-39
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = -3

Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMHG 347
           L+LWT +IRAYVC   P + L +FR  RE G+ PD VA++T+ SAC  LG+L +AK MH 
Sbjct: 157 LVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHC 216

Query: 346 FISKADI 326
           FI K+ I
Sbjct: 217 FIEKSGI 223



 Score = 40.0 bits (92), Expect(3) = 6e-39
 Identities = 20/37 (54%), Positives = 22/37 (59%)
 Frame = -1

Query: 639 EVDSGGETVAHVVKFGNECSQFVCSVLLGFYVGCRCV 529
           EV  G E  A VV+ G  CS+FV   LLGFYV C  V
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLV 142


>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score = 57.8 bits (138), Expect(3) = 3e-17
 Identities = 28/73 (38%), Positives = 41/73 (56%)
 Frame = -2

Query: 311 FVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMI 132
           ++  G+ + AR+LF  ++ + +V W TM+    +   L  A  LF  MPDKDVV WN MI
Sbjct: 253 YMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMI 312

Query: 131 GGLSQMGQSKEVI 93
           GG     + KE +
Sbjct: 313 GGYVHANRGKEAL 325



 Score = 53.5 bits (127), Expect(3) = 3e-17
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = -3

Query: 529 ELILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMH 350
           +L+ W SMI  YV      E L  +R+ +  GI PD V +  + S+CAQL +LD+ +  H
Sbjct: 172 DLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESH 231

Query: 349 GFISK 335
            +I +
Sbjct: 232 CYIEE 236



 Score = 23.1 bits (48), Expect(3) = 3e-17
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = -1

Query: 702 DSARPEQQKVEDKGKGKKILVEVDSGGETVAHVVKFGNECSQFVCSVLLGFYVGC 538
           D  +P+        K    L  +  G E + HV+  G +   FV + ++   V C
Sbjct: 101 DGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSC 155



 Score = 57.8 bits (138), Expect(2) = 2e-08
 Identities = 28/79 (35%), Positives = 46/79 (58%)
 Frame = -3

Query: 529 ELILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMH 350
           +++ W +MI  YV AN  +E L +F + +   I PD V + +  SAC+QLG LD+   +H
Sbjct: 304 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 363

Query: 349 GFISKADISKAGILWTLVV 293
            +I K ++S    L T ++
Sbjct: 364 HYIEKHELSLNVALGTALI 382



 Score = 26.9 bits (58), Expect(2) = 2e-08
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = -2

Query: 311 FVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMI 132
           +   G    A ++F E+  RN + W  +I     H N   A   F  M D  V+   +  
Sbjct: 385 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 444

Query: 131 GGL 123
            GL
Sbjct: 445 LGL 447


>tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
          Length = 536

 Score = 73.6 bits (179), Expect(2) = 2e-16
 Identities = 33/75 (44%), Positives = 47/75 (62%)
 Frame = -2

Query: 317 RYFVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNM 138
           R + + G    +RRLF  +  R+ V WN M+HQ ++H N+G+A  LF  MP +DVVSWN 
Sbjct: 165 RVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNT 224

Query: 137 MIGGLSQMGQSKEVI 93
           MI G S +G+  E +
Sbjct: 225 MIAGYSLVGRFMEAL 239



 Score = 38.5 bits (88), Expect(2) = 2e-16
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIA 362
           L+  T+M RA+  +    + L VFR     G++PD+VALA   +AC    +L  A
Sbjct: 78  LVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAA 132


>ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
           gi|238007354|gb|ACR34712.1| unknown [Zea mays]
          Length = 464

 Score = 73.6 bits (179), Expect(2) = 2e-16
 Identities = 33/75 (44%), Positives = 47/75 (62%)
 Frame = -2

Query: 317 RYFVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNM 138
           R + + G    +RRLF  +  R+ V WN M+HQ ++H N+G+A  LF  MP +DVVSWN 
Sbjct: 93  RVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNT 152

Query: 137 MIGGLSQMGQSKEVI 93
           MI G S +G+  E +
Sbjct: 153 MIAGYSLVGRFMEAL 167



 Score = 38.5 bits (88), Expect(2) = 2e-16
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIA 362
           L+  T+M RA+  +    + L VFR     G++PD+VALA   +AC    +L  A
Sbjct: 6   LVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAA 60


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