BLASTX nr result
ID: Coptis24_contig00027573
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00027573
(747 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI17926.3| unnamed protein product [Vitis vinifera] 89 5e-39
emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera] 89 6e-39
ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi... 58 3e-17
tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea m... 74 2e-16
ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea ma... 74 2e-16
>emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 88.6 bits (218), Expect(3) = 5e-39
Identities = 39/73 (53%), Positives = 53/73 (72%)
Frame = -2
Query: 305 DSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMIGG 126
+ GS D A R F E +N+VVWNTMIHQ V+H NL + LF++MPD+DVVSWN MIGG
Sbjct: 239 ECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGG 298
Query: 125 LSQMGQSKEVIVF 87
+++GQ +E + +
Sbjct: 299 FARIGQYQEALTW 311
Score = 79.7 bits (195), Expect(3) = 5e-39
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = -3
Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMHG 347
L+LWT +IRAYVC P + L +FR RE G+ PD VA++T+ SAC LG+L +AK MH
Sbjct: 157 LVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHC 216
Query: 346 FISKADI 326
FI K+ I
Sbjct: 217 FIEKSGI 223
Score = 40.0 bits (92), Expect(3) = 5e-39
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = -1
Query: 639 EVDSGGETVAHVVKFGNECSQFVCSVLLGFYVGCRCV 529
EV G E A VV+ G CS+FV LLGFYV C V
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLV 142
>emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 88.6 bits (218), Expect(3) = 6e-39
Identities = 39/73 (53%), Positives = 53/73 (72%)
Frame = -2
Query: 305 DSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMIGG 126
+ GS D A R F E +N+VVWNTMIHQ V+H NL + LF++MPD+DVVSWN MIGG
Sbjct: 239 ECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGG 298
Query: 125 LSQMGQSKEVIVF 87
+++GQ +E + +
Sbjct: 299 FARIGQYQEALTW 311
Score = 79.3 bits (194), Expect(3) = 6e-39
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = -3
Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMHG 347
L+LWT +IRAYVC P + L +FR RE G+ PD VA++T+ SAC LG+L +AK MH
Sbjct: 157 LVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHC 216
Query: 346 FISKADI 326
FI K+ I
Sbjct: 217 FIEKSGI 223
Score = 40.0 bits (92), Expect(3) = 6e-39
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = -1
Query: 639 EVDSGGETVAHVVKFGNECSQFVCSVLLGFYVGCRCV 529
EV G E A VV+ G CS+FV LLGFYV C V
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLV 142
>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 57.8 bits (138), Expect(3) = 3e-17
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -2
Query: 311 FVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMI 132
++ G+ + AR+LF ++ + +V W TM+ + L A LF MPDKDVV WN MI
Sbjct: 253 YMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMI 312
Query: 131 GGLSQMGQSKEVI 93
GG + KE +
Sbjct: 313 GGYVHANRGKEAL 325
Score = 53.5 bits (127), Expect(3) = 3e-17
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = -3
Query: 529 ELILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMH 350
+L+ W SMI YV E L +R+ + GI PD V + + S+CAQL +LD+ + H
Sbjct: 172 DLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESH 231
Query: 349 GFISK 335
+I +
Sbjct: 232 CYIEE 236
Score = 23.1 bits (48), Expect(3) = 3e-17
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -1
Query: 702 DSARPEQQKVEDKGKGKKILVEVDSGGETVAHVVKFGNECSQFVCSVLLGFYVGC 538
D +P+ K L + G E + HV+ G + FV + ++ V C
Sbjct: 101 DGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSC 155
Score = 57.8 bits (138), Expect(2) = 2e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = -3
Query: 529 ELILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIAKTMH 350
+++ W +MI YV AN +E L +F + + I PD V + + SAC+QLG LD+ +H
Sbjct: 304 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 363
Query: 349 GFISKADISKAGILWTLVV 293
+I K ++S L T ++
Sbjct: 364 HYIEKHELSLNVALGTALI 382
Score = 26.9 bits (58), Expect(2) = 2e-08
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -2
Query: 311 FVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNMMI 132
+ G A ++F E+ RN + W +I H N A F M D V+ +
Sbjct: 385 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 444
Query: 131 GGL 123
GL
Sbjct: 445 LGL 447
>tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 73.6 bits (179), Expect(2) = 2e-16
Identities = 33/75 (44%), Positives = 47/75 (62%)
Frame = -2
Query: 317 RYFVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNM 138
R + + G +RRLF + R+ V WN M+HQ ++H N+G+A LF MP +DVVSWN
Sbjct: 165 RVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNT 224
Query: 137 MIGGLSQMGQSKEVI 93
MI G S +G+ E +
Sbjct: 225 MIAGYSLVGRFMEAL 239
Score = 38.5 bits (88), Expect(2) = 2e-16
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -3
Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIA 362
L+ T+M RA+ + + L VFR G++PD+VALA +AC +L A
Sbjct: 78 LVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAA 132
>ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 73.6 bits (179), Expect(2) = 2e-16
Identities = 33/75 (44%), Positives = 47/75 (62%)
Frame = -2
Query: 317 RYFVDSGSFDCARRLFYEVSPRNVVVWNTMIHQCVKHENLGEAQNLFKTMPDKDVVSWNM 138
R + + G +RRLF + R+ V WN M+HQ ++H N+G+A LF MP +DVVSWN
Sbjct: 93 RVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNT 152
Query: 137 MIGGLSQMGQSKEVI 93
MI G S +G+ E +
Sbjct: 153 MIAGYSLVGRFMEAL 167
Score = 38.5 bits (88), Expect(2) = 2e-16
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -3
Query: 526 LILWTSMIRAYVCANCPREGLGVFRKTREAGIMPDSVALATIASACAQLGNLDIA 362
L+ T+M RA+ + + L VFR G++PD+VALA +AC +L A
Sbjct: 6 LVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAA 60