BLASTX nr result
ID: Coptis24_contig00027520
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00027520
(385 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containi... 140 1e-31
ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207... 140 1e-31
ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containi... 138 5e-31
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi... 134 1e-29
ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containi... 134 1e-29
>ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 140 bits (352), Expect = 1e-31
Identities = 63/128 (49%), Positives = 89/128 (69%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEKNG+ PDLV+FNT+L Y+ G F DGE +WARME I PD++SYNA+L+G V +
Sbjct: 206 MEKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENKNIAPDLVSYNARLRGMVLDKR 265
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
I + +EL+ +++ +E+KPD YN LI C G+L+EAK+ Y + +S+ PN TTY
Sbjct: 266 IQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEAKKWYYKLKESEVDPNATTYRT 325
Query: 362 LIPCVCEK 385
L+P +CEK
Sbjct: 326 LLPLLCEK 333
Score = 70.5 bits (171), Expect = 1e-10
Identities = 37/111 (33%), Positives = 54/111 (48%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
ME + PDLVS+N L G DG + A+MEE I PD+ YN + F G
Sbjct: 241 MENKNIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGD 300
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDF 334
+ EA + +L+ EV P+ TY L+ C+ G+ D +L + + F
Sbjct: 301 LEEAKKWYYKLKESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEAINKRF 351
>ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207147 [Cucumis sativus]
Length = 2802
Score = 140 bits (352), Expect = 1e-31
Identities = 63/128 (49%), Positives = 89/128 (69%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEKNG+ PDLV+FNT+L Y+ G F DGE +WARME I PD++SYNA+L+G V +
Sbjct: 1063 MEKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENKNIAPDLVSYNARLRGMVLDKR 1122
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
I + +EL+ +++ +E+KPD YN LI C G+L+EAK+ Y + +S+ PN TTY
Sbjct: 1123 IQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEAKKWYYKLKESEVDPNATTYRT 1182
Query: 362 LIPCVCEK 385
L+P +CEK
Sbjct: 1183 LLPLLCEK 1190
Score = 138 bits (347), Expect = 5e-31
Identities = 62/128 (48%), Positives = 91/128 (71%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEKNG+ P+LV+FNT+L Y+ G F DGER+WA ME I PD++SYNA+L+G V +
Sbjct: 1443 MEKNGMEPNLVTFNTLLTALYRKGQFFDGERVWATMENKNIAPDLVSYNARLRGMVLEKR 1502
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
I + +EL+ +++ +E+KPD +YNILIK C G+L+EAK+ Y + +S+ P TTY
Sbjct: 1503 IQDGIELLAKMEEKEIKPDVYSYNILIKGFCQDGDLEEAKKWYYKLKESEVDPIATTYRI 1562
Query: 362 LIPCVCEK 385
L+P +CE+
Sbjct: 1563 LLPLLCEQ 1570
Score = 124 bits (311), Expect = 8e-27
Identities = 56/128 (43%), Positives = 85/128 (66%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEKNG P+LV+FNT+L Y G F DGE +WARME I PD+ISYNA+LQ V +
Sbjct: 1860 MEKNGTEPNLVTFNTLLTALYSKGQFLDGESMWARMENKNIAPDLISYNARLQRMVLEKR 1919
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
I + ++L+ +++ + +KP+ +Y ILI+ C+ G+L++AK+ Y + ++ PN + Y
Sbjct: 1920 IQDGIQLLAEMEEKAIKPNVDSYYILIEGFCEDGDLEQAKQWYYKLKDNEVNPNASIYRT 1979
Query: 362 LIPCVCEK 385
L+P CEK
Sbjct: 1980 LLPLYCEK 1987
Score = 76.6 bits (187), Expect = 2e-12
Identities = 40/111 (36%), Positives = 57/111 (51%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
ME + PDLVS+N L G DG + A+MEE I PD+ SYN ++GF G
Sbjct: 1478 MENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPDVYSYNILIKGFCQDGD 1537
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDF 334
+ EA + +L+ EV P TY IL+ C+ G+ D +L + + F
Sbjct: 1538 LEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFDSGLQLCKEAIDKGF 1588
Score = 70.5 bits (171), Expect = 1e-10
Identities = 37/111 (33%), Positives = 54/111 (48%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
ME + PDLVS+N L G DG + A+MEE I PD+ YN + F G
Sbjct: 1098 MENKNIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGD 1157
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDF 334
+ EA + +L+ EV P+ TY L+ C+ G+ D +L + + F
Sbjct: 1158 LEEAKKWYYKLKESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEAINKRF 1208
Score = 66.2 bits (160), Expect = 3e-09
Identities = 33/102 (32%), Positives = 51/102 (50%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
ME + PDL+S+N L DG ++ A MEE I P++ SY ++GF G
Sbjct: 1895 MENKNIAPDLISYNARLQRMVLEKRIQDGIQLLAEMEEKAIKPNVDSYYILIEGFCEDGD 1954
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRL 307
+ +A + +L+ EV P+ Y L+ C+ G+ D RL
Sbjct: 1955 LEQAKQWYYKLKDNEVNPNASIYRTLLPLYCEKGDFDSGLRL 1996
>ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 138 bits (347), Expect = 5e-31
Identities = 62/128 (48%), Positives = 91/128 (71%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEKNG+ P+LV+FNT+L Y+ G F DGER+WA ME I PD++SYNA+L+G V +
Sbjct: 206 MEKNGMEPNLVTFNTLLTALYRKGQFFDGERVWATMENKNIAPDLVSYNARLRGMVLEKR 265
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
I + +EL+ +++ +E+KPD +YNILIK C G+L+EAK+ Y + +S+ P TTY
Sbjct: 266 IQDGIELLAKMEEKEIKPDVYSYNILIKGFCQDGDLEEAKKWYYKLKESEVDPIATTYRI 325
Query: 362 LIPCVCEK 385
L+P +CE+
Sbjct: 326 LLPLLCEQ 333
Score = 76.6 bits (187), Expect = 2e-12
Identities = 40/111 (36%), Positives = 57/111 (51%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
ME + PDLVS+N L G DG + A+MEE I PD+ SYN ++GF G
Sbjct: 241 MENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPDVYSYNILIKGFCQDGD 300
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDF 334
+ EA + +L+ EV P TY IL+ C+ G+ D +L + + F
Sbjct: 301 LEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFDSGLQLCKEAIDKGF 351
>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 134 bits (336), Expect = 1e-29
Identities = 59/128 (46%), Positives = 94/128 (73%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEK G+ PDL++FNT+LN FY++G ++DGE+IW M+++ + P++ SYNAKL+G ++ +
Sbjct: 189 MEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENR 248
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
+SEAVEL++++++ +KPD T N L+K C+ GNL+EAKR Y + +++ P TY
Sbjct: 249 MSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMT 308
Query: 362 LIPCVCEK 385
LIP + EK
Sbjct: 309 LIPFLVEK 316
>ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 134 bits (336), Expect = 1e-29
Identities = 59/128 (46%), Positives = 94/128 (73%)
Frame = +2
Query: 2 MEKNGVNPDLVSFNTILNGFYKSGHFSDGERIWARMEESGIVPDIISYNAKLQGFVNVGK 181
MEK G+ PDL++FNT+LN FY++G ++DGE+IW M+++ + P++ SYNAKL+G ++ +
Sbjct: 189 MEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENR 248
Query: 182 ISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEA 361
+SEAVEL++++++ +KPD T N L+K C+ GNL+EAKR Y + +++ P TY
Sbjct: 249 MSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMT 308
Query: 362 LIPCVCEK 385
LIP + EK
Sbjct: 309 LIPFLVEK 316