BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027507
         (831 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588289.1| Pentatricopeptide repeat-containing protein ...   122   1e-38
ref|XP_003607061.1| Pentatricopeptide repeat-containing protein,...   122   1e-38
ref|XP_003589556.1| Pentatricopeptide repeat-containing protein ...   122   1e-38
ref|XP_002454427.1| hypothetical protein SORBIDRAFT_04g030740 [S...   100   9e-32
gb|ADB85413.1| putative endonuclease [Phyllostachys edulis]           100   1e-31

>ref|XP_003588289.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|357469333|ref|XP_003604951.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|357520985|ref|XP_003630781.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355477337|gb|AES58540.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355506006|gb|AES87148.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355524803|gb|AET05257.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 775

 Score =  122 bits (305), Expect(2) = 1e-38
 Identities = 54/73 (73%), Positives = 65/73 (89%)
 Frame = +1

Query: 613 QENAMYIAVHFMRIRENEASFRVYKWMMQQHWYRFDFDFATKLADYMGKERKFTKCREIF 792
           Q++A YI +H +RIRENE +FRVYKWMMQ+ WYRFDF  +T+LADYMGKERKFTKCRE+F
Sbjct: 154 QDDATYIIMHCLRIRENETAFRVYKWMMQRSWYRFDFALSTRLADYMGKERKFTKCREVF 213

Query: 793 NNIINQGCVPSES 831
           ++IINQG VPSES
Sbjct: 214 DDIINQGRVPSES 226



 Score = 64.7 bits (156), Expect(2) = 1e-38
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +3

Query: 501 WRRSKIAWLCKELPSHKPATLIRILNAQRKWI 596
           WRRS++AWLCKELP+HK  TLIRILNAQRKW+
Sbjct: 121 WRRSRVAWLCKELPAHKAGTLIRILNAQRKWL 152


>ref|XP_003607061.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula] gi|355508116|gb|AES89258.1|
           Pentatricopeptide repeat-containing protein, partial
           [Medicago truncatula]
          Length = 767

 Score =  122 bits (305), Expect(2) = 1e-38
 Identities = 54/73 (73%), Positives = 65/73 (89%)
 Frame = +1

Query: 613 QENAMYIAVHFMRIRENEASFRVYKWMMQQHWYRFDFDFATKLADYMGKERKFTKCREIF 792
           Q++A YI +H +RIRENE +FRVYKWMMQ+ WYRFDF  +T+LADYMGKERKFTKCRE+F
Sbjct: 154 QDDATYIIMHCLRIRENETAFRVYKWMMQRSWYRFDFALSTRLADYMGKERKFTKCREVF 213

Query: 793 NNIINQGCVPSES 831
           ++IINQG VPSES
Sbjct: 214 DDIINQGRVPSES 226



 Score = 64.7 bits (156), Expect(2) = 1e-38
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +3

Query: 501 WRRSKIAWLCKELPSHKPATLIRILNAQRKWI 596
           WRRS++AWLCKELP+HK  TLIRILNAQRKW+
Sbjct: 121 WRRSRVAWLCKELPAHKAGTLIRILNAQRKWL 152


>ref|XP_003589556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355478604|gb|AES59807.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 761

 Score =  122 bits (305), Expect(2) = 1e-38
 Identities = 54/73 (73%), Positives = 65/73 (89%)
 Frame = +1

Query: 613 QENAMYIAVHFMRIRENEASFRVYKWMMQQHWYRFDFDFATKLADYMGKERKFTKCREIF 792
           Q++A YI +H +RIRENE +FRVYKWMMQ+ WYRFDF  +T+LADYMGKERKFTKCRE+F
Sbjct: 154 QDDATYIIMHCLRIRENETAFRVYKWMMQRSWYRFDFALSTRLADYMGKERKFTKCREVF 213

Query: 793 NNIINQGCVPSES 831
           ++IINQG VPSES
Sbjct: 214 DDIINQGRVPSES 226



 Score = 64.7 bits (156), Expect(2) = 1e-38
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +3

Query: 501 WRRSKIAWLCKELPSHKPATLIRILNAQRKWI 596
           WRRS++AWLCKELP+HK  TLIRILNAQRKW+
Sbjct: 121 WRRSRVAWLCKELPAHKAGTLIRILNAQRKWL 152


>ref|XP_002454427.1| hypothetical protein SORBIDRAFT_04g030740 [Sorghum bicolor]
           gi|241934258|gb|EES07403.1| hypothetical protein
           SORBIDRAFT_04g030740 [Sorghum bicolor]
          Length = 794

 Score = 99.8 bits (247), Expect(2) = 9e-32
 Identities = 42/73 (57%), Positives = 59/73 (80%)
 Frame = +1

Query: 613 QENAMYIAVHFMRIRENEASFRVYKWMMQQHWYRFDFDFATKLADYMGKERKFTKCREIF 792
           Q++A Y+AVH +RIR N+A+FRVY WM++QHWYRF+F  AT++AD + +E K  KCRE+F
Sbjct: 151 QDDATYVAVHCLRIRHNDAAFRVYSWMVRQHWYRFNFALATRVADCLAREGKVEKCREVF 210

Query: 793 NNIINQGCVPSES 831
           + +I QG VP+ES
Sbjct: 211 DAMIKQGRVPAES 223



 Score = 63.9 bits (154), Expect(2) = 9e-32
 Identities = 33/60 (55%), Positives = 40/60 (66%)
 Frame = +3

Query: 417 SNELDVAELKKLASXXXXXXXXXXXXXQWRRSKIAWLCKELPSHKPATLIRILNAQRKWI 596
           S EL+V EL++L               QWRRS+IAWLCKELP++K +T  RILNAQRKWI
Sbjct: 103 SPELEVFELEELPE-------------QWRRSRIAWLCKELPAYKHSTFTRILNAQRKWI 149


>gb|ADB85413.1| putative endonuclease [Phyllostachys edulis]
          Length = 787

 Score = 99.8 bits (247), Expect(2) = 1e-31
 Identities = 41/73 (56%), Positives = 59/73 (80%)
 Frame = +1

Query: 613 QENAMYIAVHFMRIRENEASFRVYKWMMQQHWYRFDFDFATKLADYMGKERKFTKCREIF 792
           Q++A Y+AVH +RIR N+A+FRVY WM++QHWYRF+F  AT++AD +G+E K  KC+E+F
Sbjct: 144 QDDATYVAVHCLRIRNNDAAFRVYSWMVRQHWYRFNFALATRVADCLGREGKVEKCQEVF 203

Query: 793 NNIINQGCVPSES 831
             ++ QG VP+ES
Sbjct: 204 EAMVKQGRVPAES 216



 Score = 63.5 bits (153), Expect(2) = 1e-31
 Identities = 32/60 (53%), Positives = 40/60 (66%)
 Frame = +3

Query: 417 SNELDVAELKKLASXXXXXXXXXXXXXQWRRSKIAWLCKELPSHKPATLIRILNAQRKWI 596
           S EL+V EL++L               QWRRS+IAWLCKELP++K +T  RILNAQRKW+
Sbjct: 96  SPELEVPELEELPE-------------QWRRSRIAWLCKELPAYKHSTFTRILNAQRKWL 142