BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027479
         (1159 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    68   4e-09
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    65   3e-08
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    63   1e-07
ref|XP_002528148.1| conserved hypothetical protein [Ricinus comm...    62   4e-07
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    59   4e-07

>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
            gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
            III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 68.2 bits (165), Expect = 4e-09
 Identities = 43/125 (34%), Positives = 60/125 (48%)
 Frame = -3

Query: 1088 KRIWKLDLAANWQIFIWKMYSGGLATGDTLRNKKLNIDLSCPFCYKRVEDGLHLFFLCEW 909
            K IWKL L    + F+WK+    + T   LR + + +D  CP C+   E   H F  C  
Sbjct: 261  KLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPM 320

Query: 908  TRSVWFASCLSYRTDAHDYWNLKDWLNEIINWCFSPIKEVADKGVFACILLHQIWTLRNL 729
            T  VWFAS L ++       +L  WL   ++W  +  KE     +F C+ L +IW  RN 
Sbjct: 321  TLQVWFASPLGFQPPPQT--DLNAWL---LSWLSA--KEPLAVQLF-CVCLWKIWFFRNQ 372

Query: 728  VKFEQ 714
            V F Q
Sbjct: 373  VIFNQ 377


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 65.1 bits (157), Expect = 3e-08
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
 Frame = -3

Query: 1085 RIWKLDLAANWQIFIWKMYSGGLATGDTLRNKKLNIDLSCPFCYKRVEDGLHLFFLCEWT 906
            + W  DL   W+ F W++ +  LAT   LR + + I   C  C +  E+  HLF  C  +
Sbjct: 1056 KFWASDLLPKWKFFTWRLLNKALATSSNLRKRNILIQEMCSLCKQDKENESHLFRDCNIS 1115

Query: 905  RSVWFASCLSYRTDAHDYWNLKDWLNEIIN--WCFSPIKEVADKGVFACILLHQIWTLRN 732
            R VW +S L  R       +++DW+   +   W    +K        A   L  IW  RN
Sbjct: 1116 RHVWASSLLGIRICPMTVISIEDWIKNFLKLLWKEDGVKSPRVSEFIA--TLWAIWIHRN 1173

Query: 731  LVKFEQGKPDREGLLKKTTSLWRKCLES 648
             V F   + +   ++    +L ++  ES
Sbjct: 1174 NVIFRSEEVNPVAIMNLKIALLKEIRES 1201


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
            gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
            protein [Arabidopsis thaliana]
            gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
            [Arabidopsis thaliana]
          Length = 343

 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 36/124 (29%), Positives = 61/124 (49%)
 Frame = -3

Query: 1085 RIWKLDLAANWQIFIWKMYSGGLATGDTLRNKKLNIDLSCPFCYKRVEDGLHLFFLCEWT 906
            +IWKL  A   + F+WK+ SG LATGD L+ + +     C  C +  E   HLFF C + 
Sbjct: 17   KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 905  RSVWFASCLSYRTDAHDYWNLKDWLNEIINWCFSPIKEVADKGVFACILLHQIWTLRNLV 726
            + VW AS + ++        ++  +  +++ C +           A  +L ++W  RN +
Sbjct: 77   QQVWRASGIPHQELRTTGITMETKMELLLSSCLA--NRQPQLFNLAIWILWRLWKSRNQL 134

Query: 725  KFEQ 714
             F+Q
Sbjct: 135  VFQQ 138


>ref|XP_002528148.1| conserved hypothetical protein [Ricinus communis]
            gi|223532446|gb|EEF34239.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 157

 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -3

Query: 1082 IWKLDLAANWQIFIWKMYSGGLATGDTLRNKKLNIDLSCPFCYKRVEDGL-HLFFLCEWT 906
            +W L +    ++F WK+ + GL  G+ +  + L+++  C  C  R  + L HLF  C W 
Sbjct: 2    VWHLLVTNKIRVFFWKLLNNGLPIGEAINCRLLHVEGLCFRC--RASETLDHLFLHCPWA 59

Query: 905  RSVWFASCLSYRTDAHDYWNLKD-WLNEIINWCFSPIKEVADK 780
             ++W  S LS RT++   W  ++ WL   +N  F PIK++ +K
Sbjct: 60   HTIWSRSTLSIRTESVALWKARNSWL---LNVNFGPIKKLCNK 99


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 59.3 bits (142), Expect(2) = 4e-07
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
 Frame = -3

Query: 1085 RIWKLDLAANWQIFIWKMYSGGLATGDTLRNKKLNIDLSCPFCYKRVEDGLHLFFLCEWT 906
            RIW L +    + F+W+  S  LAT + L  + + ID SCP C++  E   H  F C + 
Sbjct: 1427 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 1486

Query: 905  RSVWFASCLSYRTDAHDYWNLKDWLNEIINWCFSPIKEVADKGVFACILLHQIWTLRNLV 726
               W  S  S   +     + ++ ++ I+N+          K +    L+ +IW  RN V
Sbjct: 1487 TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK-LLPVWLIWRIWKARNNV 1545

Query: 725  KFEQGK--PDREGL-LKKTTSLWRKCLESFRKETTTEQRVTHNSM 600
             F + +  P +  L  K  T  W    +S +K  +  +++  N +
Sbjct: 1546 VFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKI 1590



 Score = 21.9 bits (45), Expect(2) = 4e-07
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 481  FDAAFDKSTGQGAAGAIFWNHEG 413
            FDA FD    +   G I  NH G
Sbjct: 1604 FDAGFDVQKLEATGGWIIRNHYG 1626