BLASTX nr result

ID: Coptis24_contig00027457 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027457
         (1680 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633481.1| PREDICTED: uncharacterized protein LOC100254...   377   e-102
ref|XP_002534081.1| DNA repair protein RAD50, putative [Ricinus ...   352   2e-94
emb|CAN83583.1| hypothetical protein VITISV_009664 [Vitis vinifera]   324   5e-86
emb|CBI30188.3| unnamed protein product [Vitis vinifera]              313   7e-83
ref|XP_002264975.2| PREDICTED: uncharacterized protein LOC100248...   306   1e-80

>ref|XP_003633481.1| PREDICTED: uncharacterized protein LOC100254715 [Vitis vinifera]
          Length = 1395

 Score =  377 bits (968), Expect = e-102
 Identities = 230/530 (43%), Positives = 322/530 (60%), Gaps = 1/530 (0%)
 Frame = -2

Query: 1679 NASFSASGSRISFDSAEGSVDKTTFSPRHDFSGDLYDPIGIQDSPSLRNGGTHGAVPVGD 1500
            + S SASGS  SFDS EGS+ +   SP++ F+G + D IG QDS S  +    G+ P  D
Sbjct: 204  DTSRSASGSHRSFDSMEGSLGRENLSPQNPFTGVMNDLIGKQDSTSSNSSSLFGSYPAND 263

Query: 1499 HSRSNQTSFNSRFTTSGSNLHSQRQELGHSPSTLAMSSLGNARSSKELLEAAEDTIEELR 1320
             SRSN++SFNS+ ++SGS+L +QR + G     +A S L NA S K+L EAAE   EELR
Sbjct: 264  ISRSNRSSFNSKVSSSGSHLQNQRDDFGRVSHAIATSPLRNAGSCKDL-EAAEGAFEELR 322

Query: 1319 SEAKMWERNARKLMHDLELVRKESSGQSRHQADLDMELSAACTERDSXXXXXXXXXXXXX 1140
            +EA+MWE+NARKLMHDLE++RKE S QS++QADLDMEL+A+ TE +              
Sbjct: 323  AEARMWEQNARKLMHDLEILRKEFSNQSKNQADLDMELAASHTECNRLRQEIEQLNFLLE 382

Query: 1139 XXXXKNMASEHSISQAEGISHIQKELESEIKFQKESNTNLAVQLEKTQESNIELVSILQE 960
                +   +E+   QA+ +++IQ+ELE EIKFQKESN NL +QL+KTQESNIELVS+LQE
Sbjct: 383  ELTVRQKDTENLKLQAQNMNNIQQELEDEIKFQKESNANLTIQLKKTQESNIELVSVLQE 442

Query: 959  LEETIEKQRLEIDAISAERVNLSTEENCEHGNEDMECPNENQDIQKLVEVQKEFQATVCX 780
            +EE IEKQ++EI        +LS E+N E                  +E++++ +A    
Sbjct: 443  MEEMIEKQKMEI-------TDLSKEKNHE------------------IEIERDLKA---- 473

Query: 779  XXXXXXXXXXXXXXXXXLRRTLLELEADYKYKLSAREVEMMKLEAKLSDLLNTQGSNDNR 600
                               + LL+ + ++K KL+A+EV+++ LE KLS+ ++     +  
Sbjct: 474  -------------------QALLDCQEEWKCKLAAKEVDIISLETKLSEAIHALNVKETG 514

Query: 599  CSRGIDSDLIKEIETLKEKVQELENDCNELTEENLELIFKLQESKKDLRPGGDXXXXXXX 420
               G D +LIKEIE LK KVQELE DC ELT+ENL L FK++ES KDL            
Sbjct: 515  PQNGGDHNLIKEIEALKVKVQELERDCVELTDENLSLHFKIKESSKDLMTCAASFKSLSS 574

Query: 419  XXXXXXSATGSEPEVDSLRSQIDQLKQELKNKEMLREGVSSTDLEVQLIDLQNMIGCLEV 240
                  S   SE EV  L+SQID+L++ELK KE+L E V++ + ++Q  DL N    LE+
Sbjct: 575  EFVGNGSPHTSESEVTKLKSQIDRLEEELKQKEILVEEVTANNFQLQCTDLNNKCTDLEL 634

Query: 239  QLHSSQDNACHLEDELRDRQVELEERRMEIISLKQELNVHREK-ETVTEL 93
            QL   +D ACHL+ EL +   + EE+ +EI +L+ +L  ++E+ ET T L
Sbjct: 635  QLQIFKDKACHLDSELYNCHTKAEEQEIEIAALQLQLKFYQEETETKTHL 684


>ref|XP_002534081.1| DNA repair protein RAD50, putative [Ricinus communis]
            gi|223525882|gb|EEF28304.1| DNA repair protein RAD50,
            putative [Ricinus communis]
          Length = 1362

 Score =  352 bits (902), Expect = 2e-94
 Identities = 222/526 (42%), Positives = 309/526 (58%)
 Frame = -2

Query: 1673 SFSASGSRISFDSAEGSVDKTTFSPRHDFSGDLYDPIGIQDSPSLRNGGTHGAVPVGDHS 1494
            SFSASGSR SFDS +GS+ + T+SP ++ +G + + IG QDS   +N  +HG+    D S
Sbjct: 166  SFSASGSRYSFDSTDGSLGRETYSPLNNLTGIMNNQIGRQDSTGSQNS-SHGSYSFNDSS 224

Query: 1493 RSNQTSFNSRFTTSGSNLHSQRQELGHSPSTLAMSSLGNARSSKELLEAAEDTIEELRSE 1314
            RSNQ+SFNS+   S S+L  QR E      ++A S L NA SSK+LLEAAE  IEELR+E
Sbjct: 225  RSNQSSFNSKVLASRSSLQIQRDEFNQVSRSVASSPLRNAGSSKDLLEAAEAKIEELRAE 284

Query: 1313 AKMWERNARKLMHDLELVRKESSGQSRHQADLDMELSAACTERDSXXXXXXXXXXXXXXX 1134
            A+MWE+NARKLM+DLE +RKE S QS+ QA L+MELS +  E D                
Sbjct: 285  ARMWEQNARKLMNDLEKLRKELSDQSKCQASLEMELSESRRECDGLKQEIEQVKILLEES 344

Query: 1133 XXKNMASEHSISQAEGISHIQKELESEIKFQKESNTNLAVQLEKTQESNIELVSILQELE 954
              K  ++E+   QA+ + ++QKELE E++F+KESN NLA+QL+KTQESNIELVSILQELE
Sbjct: 345  LVKQKSAENMELQAKDMGNLQKELEDEVRFEKESNANLALQLKKTQESNIELVSILQELE 404

Query: 953  ETIEKQRLEIDAISAERVNLSTEENCEHGNEDMECPNENQDIQKLVEVQKEFQATVCXXX 774
            +TIEK ++EI  +S E+V            +++E            EV K          
Sbjct: 405  DTIEKLKMEIANLSKEKV------------QELEA----------AEVLK---------- 432

Query: 773  XXXXXXXXXXXXXXXLRRTLLELEADYKYKLSAREVEMMKLEAKLSDLLNTQGSNDNRCS 594
                             +TL+E EA ++ KL+ +E E++ L++KLS+ L       +   
Sbjct: 433  ----------------TQTLMECEAQWRDKLAVKEEEIINLKSKLSEALKV-----DNFE 471

Query: 593  RGIDSDLIKEIETLKEKVQELENDCNELTEENLELIFKLQESKKDLRPGGDXXXXXXXXX 414
             G D +LIKE+E LK+K++ELE DCNELT+ENLEL+ KL+ES+KDL   G          
Sbjct: 472  NGADKNLIKEVEVLKQKIEELEKDCNELTDENLELLLKLKESEKDLPICGASSNHLSNEY 531

Query: 413  XXXXSATGSEPEVDSLRSQIDQLKQELKNKEMLREGVSSTDLEVQLIDLQNMIGCLEVQL 234
                S + SE EV  + S    L++EL  KEM  E +S+  L++Q  DL+     LE+ L
Sbjct: 532  EENSSLSISESEVSKMISLKGMLEEELNKKEMFIEQLSTDHLKIQCTDLEKKCADLELHL 591

Query: 233  HSSQDNACHLEDELRDRQVELEERRMEIISLKQELNVHREKETVTE 96
               +D   +L+ EL       EE+ +EI +L+Q+L   + KET T+
Sbjct: 592  QDFKDKTSYLDGELSIYHARAEEQGIEITALRQQLESFQGKETETK 637


>emb|CAN83583.1| hypothetical protein VITISV_009664 [Vitis vinifera]
          Length = 2427

 Score =  324 bits (830), Expect = 5e-86
 Identities = 229/571 (40%), Positives = 312/571 (54%), Gaps = 38/571 (6%)
 Frame = -2

Query: 1673 SFSASGSRISFDSAEGSVDKTTFSPRHDFSGDLYDPIGIQDSPSLRNGGTHGAVPVGDHS 1494
            SFS SGS  SFDSA G V + +FS  ++ +GD   P G  DS S +   +H      D  
Sbjct: 205  SFSTSGSNHSFDSAGGFVVRGSFSSANNMNGDGNKPTGRDDSTSSQTSASHDKYTFEDPP 264

Query: 1493 RSNQTSFNSRFTTSGSNLHSQRQELGHSPST-LAMSSLGNARSSKELLEAAEDTIEELRS 1317
            +S  + FNSR   SG+   +   ++  S S  +A SSL N  SSK LLEAAEDTIEELR+
Sbjct: 265  QSIHSLFNSRVMGSGNLSQNPPPDIALSASNVIASSSLTNGGSSKNLLEAAEDTIEELRA 324

Query: 1316 EAKMWERNARKLMHDLELVRKESSGQSRHQADLDMELSAACTERDSXXXXXXXXXXXXXX 1137
            EAKMWERN++KLM DLE++RKE S QS++QA LDMELSAA +ERD+              
Sbjct: 325  EAKMWERNSQKLMLDLEILRKEFSDQSKNQATLDMELSAAYSERDALKKEIDQLKILLEE 384

Query: 1136 XXXKNMASEHSISQAEGISHIQKELESEIKFQKESNTNLAVQLEKTQESNIELVSILQEL 957
               K    E S  Q EG +HIQKELE EIKFQKESN NLA+QL ++QESNIELVS+LQEL
Sbjct: 385  SKMKQAMGE-STFQDEGATHIQKELEDEIKFQKESNANLALQLRRSQESNIELVSVLQEL 443

Query: 956  EETIEKQRLEIDAISAERVNLSTEENCEHGNEDMECPNENQDI----QKLVEVQKEFQAT 789
            E TIEKQ++E++ ++A R+ L+  ++  H     E   EN+D+    Q+L + +K  Q  
Sbjct: 444  ELTIEKQKIELEDLAALRLKLNDADSSIH-----ESLAENKDVALQLQQLQDSEKNLQVK 498

Query: 788  V-CXXXXXXXXXXXXXXXXXXLRRTLLELEADYKYKLSAREVEMMKLEAKLSDLLNTQGS 612
            V                      + +L++E  YK KLSA+E E++ LEA+LS+ +    S
Sbjct: 499  VGFLEQALEDKNHELENERSLSNQAILDVETGYKSKLSAKEEEIVDLEARLSESIKGTNS 558

Query: 611  NDNRCSRGIDSDLIKEIETLKEKVQELENDCNELTEENLELIFKLQESKKDLRPGGDXXX 432
                 + G D  LIKEIE LK K++ELE DCNELT+ENLEL+FKL+ESK     GG    
Sbjct: 559  EQMVANNGGDESLIKEIEALKVKLEELERDCNELTDENLELLFKLKESKSK-SMGGSASF 617

Query: 431  XXXXXXXXXXSATGSEPEVDSLRSQIDQLKQELKNK-----------------EMLRE-- 309
                      S + SE EV  L+ QI  L+QEL+ K                 E+ ++  
Sbjct: 618  DFSSTEVPAKSYSSSESEVSELKLQICHLEQELEKKVHGEDQLAAFGTSTIFSEVFKQLQ 677

Query: 308  -----------GVSSTDLEVQLIDLQNMIGCLEVQLHSSQDNACHLEDELRDRQVELEER 162
                       GVSS   E    D+ N++    V + + +D+   + + L +    LE R
Sbjct: 678  MALSQIKKPWYGVSSNVNEECGCDIDNLVDLKSVDVIAQRDHVESILNCLVELNRLLEAR 737

Query: 161  RMEIISLKQ--ELNVHREKETVTELQHTLPE 75
             +E   +++  E  +     T+ E Q  L +
Sbjct: 738  IIECEEVRKHDEAEIRDGSRTIIEAQKKLED 768


>emb|CBI30188.3| unnamed protein product [Vitis vinifera]
          Length = 1369

 Score =  313 bits (803), Expect = 7e-83
 Identities = 225/561 (40%), Positives = 305/561 (54%), Gaps = 21/561 (3%)
 Frame = -2

Query: 1673 SFSASGSRISFDSAEGSVDKTTFSPRHDFSGDLYDPIGIQDSPSLRNGGTHGAVPVGDHS 1494
            SFS SGS  SFDSA G V + +FS  ++ +GD   P G  DS S +   +H      D  
Sbjct: 190  SFSTSGSNHSFDSAGGFVVRGSFSSANNMNGDGNKPTGRDDSTSSQTSASHDKYTFEDPP 249

Query: 1493 RSNQTSFNSRFTTSGSNLHSQRQELGHSPST-LAMSSLGNARSSKELLEAAEDTIEELRS 1317
            +S  + FNSR   SG+   +   ++  S S  +A SSL N  SSK LLEAAEDTIEELR+
Sbjct: 250  QSIHSLFNSRVMGSGNLSQNPPPDIALSASNVIASSSLTNGGSSKNLLEAAEDTIEELRA 309

Query: 1316 EAKMWERNARKLMHDLELVRKESSGQSRHQADLDMELSAACTERDSXXXXXXXXXXXXXX 1137
            EAKMWERN++KLM DLE++RKE S QS++QA LDMELSAA +ERD+              
Sbjct: 310  EAKMWERNSQKLMLDLEILRKEFSDQSKNQATLDMELSAAYSERDALKKEIDQLKILLEE 369

Query: 1136 XXXKNMASEHSISQAEGISHIQKELESEIKFQKESNTNLAVQLEKTQESNIELVSILQEL 957
               K    E S  Q EG +HIQKELE EIKFQKESN NLA+QL ++QESNIELVS+LQEL
Sbjct: 370  SKMKQAMGE-STFQDEGATHIQKELEDEIKFQKESNANLALQLRRSQESNIELVSVLQEL 428

Query: 956  EETIEKQRLEIDAISAERVNLSTEENCEHGNEDMECPNENQDIQKLVEVQKEFQATVCXX 777
            E TIEKQ++E++ ++A R+ L+  ++  H     E   EN+D                  
Sbjct: 429  ELTIEKQKIELEDLAALRLKLNDADSSIH-----ESLAENKD------------------ 465

Query: 776  XXXXXXXXXXXXXXXXLRRTLLELEADYKYKLSAREVEMMKLEAKLSDLLNTQGSNDNRC 597
                                       YK KLSA+E E++ LEA+LS+ +    S     
Sbjct: 466  -------------------------TGYKSKLSAKEEEIVDLEARLSESIKGTNSEQMVA 500

Query: 596  SRGIDSDLIKEIETLKEKVQELENDCNELTEENLELIFKLQESKKDLRPGGDXXXXXXXX 417
            + G D  LIKEIE LK K++ELE DCNELT+ENLEL+FKL+ESK     GG         
Sbjct: 501  NNGGDESLIKEIEALKVKLEELERDCNELTDENLELLFKLKESKSK-SMGGSASFDFSST 559

Query: 416  XXXXXSATGSEPEVDSLRSQIDQLKQELKNK----EMLREGVSSTDLEVQLIDLQNMIGC 249
                 S + SE EV  L+ QI  L+QEL+ K    + L    +ST        LQ  +  
Sbjct: 560  EVPAKSYSSSESEVSELKLQICHLEQELEKKVHGEDQLAAFGTSTIFSEVFKQLQMALSQ 619

Query: 248  LE-----VQLHSSQDNACHLED----ELRDRQVELEERRMEIISL-------KQELNVHR 117
            ++     V  + +++  C +++    ++ D   EL ER+ EII L       ++E+ + R
Sbjct: 620  IKKPWYGVSSNVNEECGCDIDNLVDLKITDLDKELTERKSEIIKLEACLLSKEEEIGLLR 679

Query: 116  EKETVTELQHTLPETRFEKAE 54
            + +  +E Q  + E + EK +
Sbjct: 680  QSQRESESQ--VSELQKEKTQ 698


>ref|XP_002264975.2| PREDICTED: uncharacterized protein LOC100248757 [Vitis vinifera]
          Length = 2411

 Score =  306 bits (783), Expect = 1e-80
 Identities = 222/566 (39%), Positives = 297/566 (52%), Gaps = 33/566 (5%)
 Frame = -2

Query: 1673 SFSASGSRISFDSAEGSVDKTTFSPRHDFSGDLYDPIGIQDSPSLRNGGTHGAVPVGDHS 1494
            SFS SGS  SFDSA G V + +FS  ++ +GD   P G  DS S +   +H      D  
Sbjct: 205  SFSTSGSNHSFDSAGGFVVRGSFSSANNMNGDGNKPTGRDDSTSSQTSASHDKYTFEDPP 264

Query: 1493 RSNQTSFNSRFTTSGSNLHSQRQELGHSPST-LAMSSLGNARSSKELLEAAEDTIEELRS 1317
            +S  + FNSR   SG+   +   ++  S S  +A SSL N  SSK LLEAAEDTIEELR+
Sbjct: 265  QSIHSLFNSRVMGSGNLSQNPPPDIALSASNVIASSSLTNGGSSKNLLEAAEDTIEELRA 324

Query: 1316 EAKMWERNARKLMHDLELVRKESSGQSRHQADLDMELSAACTERDSXXXXXXXXXXXXXX 1137
            EAKMWERN++KLM DLE++RKE S QS++QA LDMELSAA +ERD+              
Sbjct: 325  EAKMWERNSQKLMLDLEILRKEFSDQSKNQATLDMELSAAYSERDALKKEIDQLKILLEE 384

Query: 1136 XXXKNMASEHSISQAEGISHIQKELESEIKFQKESNTNLAVQLEKTQESNIELVSILQEL 957
               K    E S  Q EG +HIQKELE EIKFQKESN NLA+QL ++QESNIELVS+LQEL
Sbjct: 385  SKMKQAMGE-STFQDEGATHIQKELEDEIKFQKESNANLALQLRRSQESNIELVSVLQEL 443

Query: 956  EETIEKQRLEIDAISAERVNLSTEENCEHGNEDMECPNENQDIQKLVEVQKEFQATVCXX 777
            E TIEKQ++E++ ++A R+ L+  ++  H     E   EN+D                  
Sbjct: 444  ELTIEKQKIELEDLAALRLKLNDADSSIH-----ESLAENKD------------------ 480

Query: 776  XXXXXXXXXXXXXXXXLRRTLLELEADYKYKLSAREVEMMKLEAKLSDLLNTQGSNDNRC 597
                                       YK KLSA+E E++ LEA+LS+ +    S     
Sbjct: 481  -------------------------TGYKSKLSAKEEEIVDLEARLSESIKGTNSEQMVA 515

Query: 596  SRGIDSDLIKEIETLKEKVQELENDCNELTEENLELIFKLQESKKDLRPGGDXXXXXXXX 417
            + G D  LIKEIE LK K++ELE DCNELT+ENLEL+FKL+ESK     GG         
Sbjct: 516  NNGGDESLIKEIEALKVKLEELERDCNELTDENLELLFKLKESKSK-SMGGSASFDFSST 574

Query: 416  XXXXXSATGSEPEVDSLRSQIDQLKQELKNK-----------------EMLRE------- 309
                 S + SE EV  L+ QI  L+QEL+ K                 E+ ++       
Sbjct: 575  EVPAKSYSSSESEVSELKLQICHLEQELEKKVHGEDQLAAFGTSTIFSEVFKQLQMALSQ 634

Query: 308  ------GVSSTDLEVQLIDLQNMIGCLEVQLHSSQDNACHLEDELRDRQVELEERRMEII 147
                  GVSS   E    D+ N++    V + + +D+   + + L +    LE R +E  
Sbjct: 635  IKKPWYGVSSNVNEECGCDIDNLVDLKSVDVIAQRDHVESILNCLVELNRLLEARIIECE 694

Query: 146  SLKQ--ELNVHREKETVTELQHTLPE 75
             +++  E  +     T+ E Q  L +
Sbjct: 695  EVRKHDEAEIRDGSRTIIEAQKKLED 720


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