BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027416
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japo...    59   4e-07
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g...    59   4e-07
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    57   2e-06
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ...    55   8e-06

>gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japonica Group]
          Length = 915

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/76 (40%), Positives = 38/76 (50%)
 Frame = -3

Query: 230 GCSSSWIFTFVYGEPISHNRKRVWDDLTNAAHHIVDPWVLFGDFNAITSLDEKDGGRKVI 51
           G   SW F  VYGE  S  R + WD L + A +   PW++ GDFN I    EK GGR   
Sbjct: 327 GGGGSWRFIGVYGEAQSDLRFKTWDTLRSLAMNPAQPWLMAGDFNEILVAAEKQGGRPKC 386

Query: 50  NRSMVEFNDFINGIGL 3
              M +F D +   GL
Sbjct: 387 QAQMDKFRDTLADCGL 402


>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
           gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
           Japonica Group]
          Length = 1453

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/76 (40%), Positives = 38/76 (50%)
 Frame = -3

Query: 230 GCSSSWIFTFVYGEPISHNRKRVWDDLTNAAHHIVDPWVLFGDFNAITSLDEKDGGRKVI 51
           G   SW F  VYGE  S  R + WD L + A +   PW++ GDFN I    EK GGR   
Sbjct: 364 GGGGSWRFIGVYGEAQSDLRFKTWDTLRSLAMNPAQPWLMAGDFNEILVAAEKQGGRPKC 423

Query: 50  NRSMVEFNDFINGIGL 3
              M +F D +   GL
Sbjct: 424 QAQMDKFRDTLADCGL 439


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 36/62 (58%)
 Frame = -3

Query: 200 VYGEPISHNRKRVWDDLTNAAHHIVDPWVLFGDFNAITSLDEKDGGRKVINRSMVEFNDF 21
           +YG PI   R  +W+ L   + H   PW++ GDFN I +L+EK GGR+    S+  F + 
Sbjct: 466 IYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNM 525

Query: 20  IN 15
           IN
Sbjct: 526 IN 527


>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1197

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/72 (38%), Positives = 37/72 (51%)
 Frame = -3

Query: 218 SWIFTFVYGEPISHNRKRVWDDLTNAAHHIVDPWVLFGDFNAITSLDEKDGGRKVINRSM 39
           S++ T+VYGEP    +   W+ L   A +  +PW L GDFN I    EK  G      S 
Sbjct: 96  SFLATYVYGEPEQSKKGATWEKLKCLADNREEPWFLTGDFNEILDNSEKSEGPPRAEGSF 155

Query: 38  VEFNDFINGIGL 3
           VEF  F++  GL
Sbjct: 156 VEFRSFMSECGL 167