BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027396
         (599 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   3e-07
gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]      57   3e-06
gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group]      56   5e-06
gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Ja...    55   7e-06
emb|CAE46398.1| gag protein [Simian immunodeficiency virus]            55   7e-06

>gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1351

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
 Frame = +1

Query: 4   VDTQVKKNQKFIRGLEPYLSSYLIPFDSETFDHVIDLSLKYE----QLDNKPKDEKIKEN 171
           V T  +K +KF+ GL+  L++ LI  D   F+ ++D +++ E    ++D K K  +++ N
Sbjct: 216 VRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDGKRKAAQLRSN 275

Query: 172 A------PKQVSLHLISSQPHQGQRKSQHH---------------PYNRQTSKHVNKDVS 288
                   +       SS  HQG   SQHH               P     S    K+  
Sbjct: 276 QGWTYHHDRPQHRPFNSSNFHQGASGSQHHGGQPNRGAAPRPPMAPTQSAPSAQAKKETG 335

Query: 289 TLLKKFDGNCLNCGEVGHTIRRCSKP 366
           T      G+C NCGE+GH   +C KP
Sbjct: 336 TK----PGSCFNCGELGHFADKCPKP 357


>gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1638

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 39/162 (24%)
 Frame = +1

Query: 4   VDTQVKKNQKFIRGLEPYLSSYLIPFDSETFDHVIDLSLKYE----QLDNKPKDEKIKEN 171
           V T  +K +KF+ GL+  L++ LI  D   F+ ++D +++ E    ++D K K  + + N
Sbjct: 386 VRTDAEKQEKFLAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKSKAAQFRSN 445

Query: 172 ---------------APKQVSLH----LISSQPHQGQRKSQHH---PYNRQ--------- 258
                           P  + +H      +S  HQG   SQ+H     NR          
Sbjct: 446 QGSHQRPRFTPGQQSGPTTLIVHQHRPFNASNFHQGASGSQNHHGGQPNRSAAPRPQMAL 505

Query: 259 ----TSKHVNKDVSTLLKKFDGNCLNCGEVGHTIRRCSKPNK 372
               TS    K+  T      G+C NCGE+GH  ++C KP +
Sbjct: 506 AQSATSAQAKKETGTK----PGSCFNCGELGHFAKKCPKPRR 543


>gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1374

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 35/158 (22%)
 Frame = +1

Query: 4   VDTQVKKNQKFIRGLEPYLSSYLIPFDSETFDHVIDLSLKYE----QLDNKPKDEKIKEN 171
           V T  +K +KF+ GL+  L++ LI  D   F+ ++D +++ E    ++D K K  + + N
Sbjct: 107 VRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRSN 166

Query: 172 APKQ-----------------VSLH--LISSQPHQGQRKSQHH---PYNRQTSKH----- 270
              Q                 V  H    SS  HQG   SQ+H     NR  + H     
Sbjct: 167 QGNQQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGASGSQNHHGGQPNRGAAPHPPVAP 226

Query: 271 VNKDVSTLLKK----FDGNCLNCGEVGHTIRRCSKPNK 372
            +   S   KK      G+C NCGE+GH   +C KP +
Sbjct: 227 AHSGPSAQAKKETGSKPGSCFNCGELGHFADKCQKPRR 264


>gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Japonica Group]
           gi|78708151|gb|ABB47126.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1425

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
 Frame = +1

Query: 4   VDTQVKKNQKFIRGLEPYLSSYLIPFDSETFDHVIDLSLKYEQLDNKPKDEKIKENAPKQ 183
           V T  +K +KF+ GL+  L++ LI  D   F+ ++D +++ E   NK      K N P+ 
Sbjct: 216 VRTDAEKQEKFLAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDR---KSNFPQG 272

Query: 184 VSLHLISSQPHQG---QRKSQHHPYNRQTSKHVNKDVSTLLKKFDGNCLNCGEVGHTIRR 354
            S     SQ H G    R +   P         +           G+C NCGE+GH   +
Sbjct: 273 AS----GSQNHHGGQPNRGAAPRPPMAPAQSGPSAQAKKETGAKPGSCFNCGELGHFADK 328

Query: 355 CSKPNK 372
           C KP +
Sbjct: 329 CPKPRR 334


>emb|CAE46398.1| gag protein [Simian immunodeficiency virus]
          Length = 558

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +1

Query: 316 CLNCGEVGHTIRRCSKPNKLV--GKCYKCGQLGHYVKNC 426
           C NCG++GH  + C KP ++   G C+KCG+LGH  KNC
Sbjct: 423 CFNCGQIGHLAKDCRKPKRVTQPGACFKCGKLGHQAKNC 461