BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027390
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279868.1| PREDICTED: uncharacterized protein LOC100263...   187   7e-46
ref|XP_002327534.1| predicted protein [Populus trichocarpa] gi|2...   181   8e-44
gb|AFK36557.1| unknown [Medicago truncatula]                          170   1e-40
ref|XP_002527419.1| RNA binding protein, putative [Ricinus commu...   168   4e-40
ref|NP_001118622.1| RNA recognition motif-containing protein [Ar...   155   5e-36

>ref|XP_002279868.1| PREDICTED: uncharacterized protein LOC100263499 [Vitis vinifera]
           gi|297743102|emb|CBI35969.3| unnamed protein product
           [Vitis vinifera]
          Length = 272

 Score =  187 bits (476), Expect = 7e-46
 Identities = 99/174 (56%), Positives = 118/174 (67%)
 Frame = -1

Query: 534 RSNSRPKRLRAGAGAYYVIDKRTKVXXXXXXXXXXXXXXXXXXXXGTNNPNSSNKGEIST 355
           RSNSR KR+  G+GAY VIDKR+K                      T+NP+S N  ++ T
Sbjct: 99  RSNSRRKRV-PGSGAYVVIDKRSKTSTNAHETSSDDGDSESDEPAKTSNPDSGNNDDLVT 157

Query: 354 AESADKAVDHGNAGVTENEQSEKAVAGDRPPCSTLFIANLGPNCTEEELKGALSQYTGFH 175
           A+S + AVD  +     NEQ EK      PPCSTLFIANLGP CTE+ELK  LSQY GF+
Sbjct: 158 AKSGEMAVDPDSTLTAVNEQPEKTTDAGLPPCSTLFIANLGPTCTEDELKQVLSQYPGFN 217

Query: 174 IVKMRANRGMPVAFADFEEVDQATEAMNGLQDSLLPSSDRGGMHLEYARSKMRK 13
           ++KMRA  GMPVAFADFEE++QA +AM+ LQ S+L SSDRGGMHLEYARSKMRK
Sbjct: 218 VLKMRAKGGMPVAFADFEEIEQANKAMDALQGSMLASSDRGGMHLEYARSKMRK 271


>ref|XP_002327534.1| predicted protein [Populus trichocarpa] gi|222836088|gb|EEE74509.1|
           predicted protein [Populus trichocarpa]
          Length = 281

 Score =  181 bits (458), Expect = 8e-44
 Identities = 97/174 (55%), Positives = 117/174 (67%)
 Frame = -1

Query: 534 RSNSRPKRLRAGAGAYYVIDKRTKVXXXXXXXXXXXXXXXXXXXXGTNNPNSSNKGEIST 355
           RSNSR KR + G+GAY VIDKRTK                       NN +++ +G+   
Sbjct: 109 RSNSRRKR-KPGSGAYVVIDKRTKKPSDAHETSSDDVESDPEEDPEMNNVDTAYQGDSEN 167

Query: 354 AESADKAVDHGNAGVTENEQSEKAVAGDRPPCSTLFIANLGPNCTEEELKGALSQYTGFH 175
           A+S + A D  NA V  NE  E+   G   PCSTLFIANLGPNCTE+ELK  LSQY GFH
Sbjct: 168 AKS-EAASDPDNAAVAVNEIGERTAEGGVRPCSTLFIANLGPNCTEDELKQVLSQYPGFH 226

Query: 174 IVKMRANRGMPVAFADFEEVDQATEAMNGLQDSLLPSSDRGGMHLEYARSKMRK 13
           ++K+RA  GMPVAFADFEE++QAT+ M  LQ++ LPSSDRGGMH+EYARSKMRK
Sbjct: 227 VLKIRAKGGMPVAFADFEEIEQATKVMENLQETTLPSSDRGGMHIEYARSKMRK 280


>gb|AFK36557.1| unknown [Medicago truncatula]
          Length = 268

 Score =  170 bits (430), Expect = 1e-40
 Identities = 97/174 (55%), Positives = 111/174 (63%)
 Frame = -1

Query: 534 RSNSRPKRLRAGAGAYYVIDKRTKVXXXXXXXXXXXXXXXXXXXXGTNNPNSSNKGEIST 355
           RSNSR KR + G GAY VIDKR+K                        + N SN G+I+T
Sbjct: 99  RSNSRRKR-KPGGGAYVVIDKRSK----GEANVQGSSSDDGESDPDEPSENGSNHGDIAT 153

Query: 354 AESADKAVDHGNAGVTENEQSEKAVAGDRPPCSTLFIANLGPNCTEEELKGALSQYTGFH 175
           A+S D  V   N       Q  K   GD  PCSTLFIANLGPNCTE+ELK ALS Y GF+
Sbjct: 154 AQSGDAVVGSDNHVPVARAQHGKG-GGDGGPCSTLFIANLGPNCTEDELKQALSVYAGFN 212

Query: 174 IVKMRANRGMPVAFADFEEVDQATEAMNGLQDSLLPSSDRGGMHLEYARSKMRK 13
           +VKMR+  GMPVAFADFEE+DQA + M  LQ S LPSSDRGGMH+EYARS+MRK
Sbjct: 213 LVKMRSRGGMPVAFADFEEIDQAVKVMEELQGSSLPSSDRGGMHIEYARSRMRK 266


>ref|XP_002527419.1| RNA binding protein, putative [Ricinus communis]
           gi|223533229|gb|EEF34985.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 206

 Score =  168 bits (426), Expect = 4e-40
 Identities = 98/186 (52%), Positives = 119/186 (63%), Gaps = 12/186 (6%)
 Frame = -1

Query: 534 RSNSRPKRLRAGAGAYYVIDKRTKVXXXXXXXXXXXXXXXXXXXXG------------TN 391
           RSNSR  R + G+GAY VIDKRT+                                  T+
Sbjct: 23  RSNSRRVR-KPGSGAYVVIDKRTQQASNAQETSSDYGGSDSDETAAPAPAPAPAPTTATD 81

Query: 390 NPNSSNKGEISTAESADKAVDHGNAGVTENEQSEKAVAGDRPPCSTLFIANLGPNCTEEE 211
           N +S+N+G++   +S + A D  NA V  NE SEK   G   PCSTLFIANLGPNCTE+E
Sbjct: 82  NTDSANQGDLMNVKS-EPAGDPDNASVLANE-SEKTAEGGVHPCSTLFIANLGPNCTEDE 139

Query: 210 LKGALSQYTGFHIVKMRANRGMPVAFADFEEVDQATEAMNGLQDSLLPSSDRGGMHLEYA 31
           L+  LSQY GF+++KMRA  GMPVAFADFEE++QA +AM  LQ +LLPSSDRGGMH+EYA
Sbjct: 140 LRHTLSQYPGFNVLKMRAKGGMPVAFADFEEIEQAIKAMEDLQGTLLPSSDRGGMHIEYA 199

Query: 30  RSKMRK 13
           RSKMRK
Sbjct: 200 RSKMRK 205


>ref|NP_001118622.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|26449895|dbj|BAC42069.1| unknown protein [Arabidopsis
           thaliana] gi|332641880|gb|AEE75401.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 287

 Score =  155 bits (391), Expect = 5e-36
 Identities = 87/174 (50%), Positives = 109/174 (62%)
 Frame = -1

Query: 534 RSNSRPKRLRAGAGAYYVIDKRTKVXXXXXXXXXXXXXXXXXXXXGTNNPNSSNKGEIST 355
           RSNSR K  R G+G Y VID R K                        N +S  + + + 
Sbjct: 115 RSNSRRKE-RPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTK 173

Query: 354 AESADKAVDHGNAGVTENEQSEKAVAGDRPPCSTLFIANLGPNCTEEELKGALSQYTGFH 175
           +E+  +      +     E++ +  +G R  CSTLFIANLGPNCTE+ELK  LS+Y GFH
Sbjct: 174 SEADSEPDSKAPSANGHLEKASEGGSGARA-CSTLFIANLGPNCTEDELKQLLSRYPGFH 232

Query: 174 IVKMRANRGMPVAFADFEEVDQATEAMNGLQDSLLPSSDRGGMHLEYARSKMRK 13
           I+K+RA  GMPVAFADFEE++QAT+AMN LQ +LL SSDRGGMH+EYARSKMRK
Sbjct: 233 ILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEYARSKMRK 286