BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027378
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    83   2e-14
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    83   3e-14
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    77   2e-12
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    70   2e-10
emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    70   3e-10

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 15/191 (7%)
 Frame = -2

Query: 528 IRDTYIQKAIIISTPQHVEVVVCIVYTR----LFFCMPEKDDEWNYVRNSDSKKLGITGY 361
           +RD++I+K I+ S+P +    + +V       L  C  + DD W ++ ++ S        
Sbjct: 157 MRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCR-KSDDSWTFLEDAQSYAE----- 210

Query: 360 IDVTYCRGKLYTVIFDGSLFVVEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKI 181
            DV + RG  Y V   GS+ V + + G +P  ++ I +    +G     LVES  ELL +
Sbjct: 211 -DVIFHRGLFYAVNKYGSIAVCD-VSGSSP--RVSIIEMPQQFGGDLQYLVESGEELLLV 266

Query: 180 KAIRDERKT-----------TLSFKVSELDFEECKWVEVNDLGDRAIFVGFSYSFSLSAS 34
               D               T  F+V  LD +  +W  V+ LGDRA+F+G + S SLS+ 
Sbjct: 267 TRYLDLTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSV 326

Query: 33  DFPGCVRNCIY 1
           DFPGC  NCIY
Sbjct: 327 DFPGCKGNCIY 337


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 15/191 (7%)
 Frame = -2

Query: 528 IRDTYIQKAIIISTPQHVEVVVCIVYTR----LFFCMPEKDDEWNYVRNSDSKKLGITGY 361
           +RD++I+K I+ S+P +    + +V       L  C  + DD W ++ ++ S        
Sbjct: 157 MRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCR-KSDDSWTFLEDAQSYSE----- 210

Query: 360 IDVTYCRGKLYTVIFDGSLFVVEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKI 181
            DV + RG  Y V   GS+ V + + G +P  ++ I +    +G     LVES  ELL +
Sbjct: 211 -DVIFHRGLFYAVNKYGSIAVCD-VSGSSP--RVSIIEMPQQFGGDLQYLVESGEELLLV 266

Query: 180 KAIRDERKT-----------TLSFKVSELDFEECKWVEVNDLGDRAIFVGFSYSFSLSAS 34
               D               T  F+V  LD +  +W  V+ LGDRA+F+G + S SLS+ 
Sbjct: 267 TRYLDLTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSV 326

Query: 33  DFPGCVRNCIY 1
           DFPGC  NCIY
Sbjct: 327 DFPGCKGNCIY 337


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 59/173 (34%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
 Frame = -2

Query: 447 RLFFCMPEKDDEWNYV----------RNSDSKKLGI----TGYIDVTYCRGKLYTVIFDG 310
           ++ FC    DD W             R+ D K + I    + Y DV +  GK Y V   G
Sbjct: 159 KVAFCSGNGDDFWLLTIHLSGKLAMFRSGDKKWMIIDDMQSPYDDVIFFDGKFYAVDNTG 218

Query: 309 SLFVVEGLEGPTPVTKMLICDEGYHYGRGELNLVESSGELLKIKA-----------IRDE 163
              VV+  +G +PV  +        +G  +  LVES GELL +             +R  
Sbjct: 219 RTVVVDVADGSSPVVNLAASSV---FGGDKKVLVESEGELLLVDTYFTMYHDDDEHVRWM 275

Query: 162 RKTTLSFKVSELDFEECKWVEVNDLGDRAIFVGFSYSFSLSASDFPGCVRNCI 4
            +  + FKV  LD  E KWVE+  LGDR +F+G   SFS  ASDF GC  N I
Sbjct: 276 IERMIHFKVFRLDQREQKWVEIESLGDRLLFLGDDSSFSARASDFYGCKGNSI 328


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
 Frame = -2

Query: 528 IRDTYIQKAIIISTP----QHVEVVVCIVYTRLFFCMPEKDDEWNYVRNSDSKKLGITGY 361
           +RD++I+K ++ S+P      V + +      L +C    D  W+ V N+ S        
Sbjct: 160 MRDSFIRKVVLSSSPLKDNNFVVIAILNQTDDLAYCR-NGDKSWSLVENARSF------C 212

Query: 360 IDVTYCRGKLYTVIFDGSLFVVEGLEGPTPVTKMLICDEGYHYGRGELN-LVESSGELLK 184
            DV +  G  Y V   G + + + +   +P    +   E      G++  LV S  ELL 
Sbjct: 213 EDVIFVNGMFYAVNKAGQIVICD-ISSDSPRVSFM---ETPRQAGGDMQYLVNSGDELLL 268

Query: 183 IKAIRDERKT-------------TLSFKVSELDFEECKWVEVNDLGDRAIFVGFSYSFSL 43
           +    D                 T+ F+V  LD+   +W+ ++ LGD+A+F+G + S SL
Sbjct: 269 VTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSL 328

Query: 42  SASDFPGCVRNCIY 1
           SA+DF GC+ NCIY
Sbjct: 329 SATDFSGCMGNCIY 342


>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
 Frame = -2

Query: 420 DDEWNYVRNSDSKKLGITGYIDVTYCRGKLYTVIFDGSLFVVEGLEGPTPVTKMLICDEG 241
           +++W+ + +   K    + + DV Y +G+ Y + + G + V++         K       
Sbjct: 205 EEKWSLIDDGAEK----SHFDDVIYYKGRFYAIDYKGRIVVIDA-----DSLKATELASP 255

Query: 240 YHYGRG-ELNLVESSGELLKIKAIRDERKTTLSFKVSELDFEECKWVEVNDLGDRAIFVG 64
            H  RG   + VES GEL     + D     + F+V +   EE KW  V+D+GDR +FVG
Sbjct: 256 VHGSRGTHKHFVESFGEL---DIVADVPDYPVHFEVFKFIEEEQKWDWVSDIGDRVLFVG 312

Query: 63  FSYSFSLSASDFPGCVRNCIY 1
              +FSLS++DFPG   NC+Y
Sbjct: 313 DDRTFSLSSTDFPGFKGNCVY 333



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
 Frame = -2

Query: 420  DDEWNYVRNSDSKKLGITGYIDVTYCRGKLYTVIFDGSLFVVEGLEGPTPVTKMLICDEG 241
            + +W+ + +   K    + + DV Y +G+ Y + + G + V++         K       
Sbjct: 595  EKKWSLIDDGAEK----SHFDDVIYYKGRFYAIDYXGRIVVIDA-----DSLKATELASP 645

Query: 240  YHYGRGE-LNLVESSGELLKIKAIRDERKTTLSFKVSEL-----DF-----------EEC 112
             H  RG   + VES GEL  +    D+   T     S++     D+           EE 
Sbjct: 646  VHGSRGNHRHFVESFGELFLV----DKYVVTFCNNYSDIVSVVPDYPVHXEVFKFIEEEQ 701

Query: 111  KWVEVNDLGDRAIFVGFSYSFSLSASDFPGCVRNCIY 1
            KW  V+ +GDR +FV    +FSLS++DFPG   NC+Y
Sbjct: 702  KWDWVSGIGDRVLFVDDDRTFSLSSTDFPGFKGNCVY 738