BLASTX nr result
ID: Coptis24_contig00027361
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027361 (728 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003635571.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 170 1e-61 ref|XP_004143411.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 159 8e-60 ref|XP_003536072.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 162 3e-58 ref|NP_195217.1| DEAD-box ATP-dependent RNA helicase 16 [Arabido... 161 3e-57 ref|XP_002867100.1| hypothetical protein ARALYDRAFT_491167 [Arab... 160 6e-57 >ref|XP_003635571.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like, partial [Vitis vinifera] Length = 301 Score = 170 bits (430), Expect(2) = 1e-61 Identities = 89/120 (74%), Positives = 94/120 (78%) Frame = +2 Query: 368 SSSTLKIAPSVFVLVPTRELSQQVYSEVLSLIESCRVQLKVVQLTGGMPASDLRATLAGR 547 S S K+APS FVLVPTREL QQVYSEVLSLIE CR QLKVVQLT M SDLR LAG Sbjct: 90 SESRNKLAPSAFVLVPTRELCQQVYSEVLSLIELCRGQLKVVQLTSSMSPSDLRVALAGP 149 Query: 548 PDILVSTPACISTCMSTNALSTKSIQDSLSILVLDEADLLLSYGYEDDLKSLISHVPRRC 727 PDILVSTP CI C+S L SI +SL ILVLDEADLLLSYGYEDDLK+L +HVPRRC Sbjct: 150 PDILVSTPGCIPKCLSAGVLQAASIIESLEILVLDEADLLLSYGYEDDLKALTAHVPRRC 209 Score = 93.2 bits (230), Expect(2) = 1e-61 Identities = 46/56 (82%), Positives = 50/56 (89%) Frame = +3 Query: 198 LGLDPRLIRSLTKKDISKPTPIQSIAIPLILEGKDVVARAKTGSGKTYAYLLPSLQ 365 LGL+P LIR+L KK I KPTPIQ +AIPLILEGKDVVARAKTGSGKT+AYLLP LQ Sbjct: 29 LGLEPSLIRALIKKGIEKPTPIQEVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQ 84 >ref|XP_004143411.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis sativus] gi|449508529|ref|XP_004163338.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis sativus] Length = 596 Score = 159 bits (403), Expect(2) = 8e-60 Identities = 80/122 (65%), Positives = 92/122 (75%) Frame = +2 Query: 362 SNSSSTLKIAPSVFVLVPTRELSQQVYSEVLSLIESCRVQLKVVQLTGGMPASDLRATLA 541 + SS+ K PS VLVPTRELSQQVY E+ SLIE+CRVQ+KV QLT M SDLR LA Sbjct: 85 TGSSTKKKSGPSAVVLVPTRELSQQVYKEISSLIETCRVQVKVAQLTSSMSHSDLRTALA 144 Query: 542 GRPDILVSTPACISTCMSTNALSTKSIQDSLSILVLDEADLLLSYGYEDDLKSLISHVPR 721 G PDI+V+TPACI C+S L SI +SL ILVLDEADLLLSYGYEDD+K+ +HVPR Sbjct: 145 GPPDIIVATPACIPKCLSAGVLQPTSINESLEILVLDEADLLLSYGYEDDIKAFAAHVPR 204 Query: 722 RC 727 C Sbjct: 205 SC 206 Score = 97.4 bits (241), Expect(2) = 8e-60 Identities = 47/56 (83%), Positives = 52/56 (92%) Frame = +3 Query: 198 LGLDPRLIRSLTKKDISKPTPIQSIAIPLILEGKDVVARAKTGSGKTYAYLLPSLQ 365 LGLDPRL+R+L KK+I KPTPIQ +AIPLILEGKDVVARAKTGSGKT+AYLLP LQ Sbjct: 26 LGLDPRLVRALIKKEIQKPTPIQHVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQ 81 >ref|XP_003536072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine max] Length = 601 Score = 162 bits (409), Expect(2) = 3e-58 Identities = 83/124 (66%), Positives = 96/124 (77%) Frame = +2 Query: 356 FASNSSSTLKIAPSVFVLVPTRELSQQVYSEVLSLIESCRVQLKVVQLTGGMPASDLRAT 535 F +NS K+AP+ FVLVPTRELSQQVY+EV SL+E CRVQLKVVQL M A+DLRA Sbjct: 85 FTANSDRK-KLAPNAFVLVPTRELSQQVYAEVKSLVELCRVQLKVVQLNSNMLANDLRAA 143 Query: 536 LAGRPDILVSTPACISTCMSTNALSTKSIQDSLSILVLDEADLLLSYGYEDDLKSLISHV 715 LAG PDIL+STPAC++ C+S L SI SL LVLDEADLLLSYGYE+D+K+L HV Sbjct: 144 LAGPPDILISTPACVAKCLSCGVLQAASINASLETLVLDEADLLLSYGYENDIKALTPHV 203 Query: 716 PRRC 727 PR C Sbjct: 204 PRSC 207 Score = 89.7 bits (221), Expect(2) = 3e-58 Identities = 45/56 (80%), Positives = 49/56 (87%) Frame = +3 Query: 198 LGLDPRLIRSLTKKDISKPTPIQSIAIPLILEGKDVVARAKTGSGKTYAYLLPSLQ 365 LG+D RL+R+L KK I KPTPIQ +AIPLILEGKDVVARAKTGSGKT AYLLP LQ Sbjct: 27 LGVDARLLRALIKKRIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQ 82 >ref|NP_195217.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] gi|75337761|sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16 gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana] gi|7270442|emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana] gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana] gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana] gi|332661036|gb|AEE86436.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] Length = 626 Score = 161 bits (408), Expect(2) = 3e-57 Identities = 81/124 (65%), Positives = 98/124 (79%) Frame = +2 Query: 356 FASNSSSTLKIAPSVFVLVPTRELSQQVYSEVLSLIESCRVQLKVVQLTGGMPASDLRAT 535 F+++S S K+APS F+LVP+REL QQVY+EV SLIE CRVQLK VQLT M ASD+R Sbjct: 109 FSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNA 168 Query: 536 LAGRPDILVSTPACISTCMSTNALSTKSIQDSLSILVLDEADLLLSYGYEDDLKSLISHV 715 LAG P+ILVSTPACI C + L ++ +SLSILVLDEADLLLSYGYED+L+S+ S + Sbjct: 169 LAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSII 228 Query: 716 PRRC 727 PRRC Sbjct: 229 PRRC 232 Score = 87.0 bits (214), Expect(2) = 3e-57 Identities = 46/56 (82%), Positives = 47/56 (83%) Frame = +3 Query: 198 LGLDPRLIRSLTKKDISKPTPIQSIAIPLILEGKDVVARAKTGSGKTYAYLLPSLQ 365 LGLD RLIR+LTKK I KPT IQ AIP ILEGKDVVARAKTGSGKT AYLLP LQ Sbjct: 51 LGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106 >ref|XP_002867100.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp. lyrata] gi|297312936|gb|EFH43359.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp. lyrata] Length = 634 Score = 160 bits (405), Expect(2) = 6e-57 Identities = 80/124 (64%), Positives = 97/124 (78%) Frame = +2 Query: 356 FASNSSSTLKIAPSVFVLVPTRELSQQVYSEVLSLIESCRVQLKVVQLTGGMPASDLRAT 535 F+++S S K+APS F+LVP+REL QVYSEV SLIE CRVQLK VQLT M ASD+R Sbjct: 111 FSADSGSKKKLAPSAFILVPSRELCHQVYSEVSSLIELCRVQLKAVQLTSSMSASDMRNA 170 Query: 536 LAGRPDILVSTPACISTCMSTNALSTKSIQDSLSILVLDEADLLLSYGYEDDLKSLISHV 715 LAG P+ILVSTPACI C + L ++ +SL+ILVLDEADLLLSYGYED+L+S+ S + Sbjct: 171 LAGLPEILVSTPACIPKCFAAGVLEPTAVSESLAILVLDEADLLLSYGYEDNLRSVTSII 230 Query: 716 PRRC 727 PRRC Sbjct: 231 PRRC 234 Score = 87.0 bits (214), Expect(2) = 6e-57 Identities = 46/56 (82%), Positives = 47/56 (83%) Frame = +3 Query: 198 LGLDPRLIRSLTKKDISKPTPIQSIAIPLILEGKDVVARAKTGSGKTYAYLLPSLQ 365 LGLD RLIR+LTKK I KPT IQ AIP ILEGKDVVARAKTGSGKT AYLLP LQ Sbjct: 53 LGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 108