BLASTX nr result
ID: Coptis24_contig00027333
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027333 (497 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFU25705.1| gag-pol precursor [Castanea mollissima] 157 1e-36 gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptas... 151 6e-35 gb|ABD63162.1| RNase H family protein [Asparagus officinalis] 150 1e-34 gb|ABD63139.1| Reverse transcriptase family protein [Asparagus o... 150 1e-34 gb|ABD63192.1| Reverse transcriptase family protein [Asparagus o... 147 9e-34 >gb|AFU25705.1| gag-pol precursor [Castanea mollissima] Length = 1106 Score = 157 bits (396), Expect = 1e-36 Identities = 70/135 (51%), Positives = 99/135 (73%) Frame = +1 Query: 91 EEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEFACHRLHMKEDAKPV 270 E++ER+ S+GS L + ++VQFL +N DVFAWT DV+G+DPEF CH L++ +A P Sbjct: 35 EDKERYFSVGSQLPALEREEVVQFLQDNIDVFAWTTYDVSGIDPEFICHHLNVSHNAMPR 94 Query: 271 RQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKKNGKVRMCVDFTDVN 450 +Q R ++AE ++EEV +LK AG I+E + EWL+N V V KKNGK R+CVDFTD+N Sbjct: 95 KQPPRHASQEHAEAVKEEVNKLKQAGAIKEIFYPEWLANTVVVKKKNGKWRVCVDFTDLN 154 Query: 451 RECPKDSYPMPRVDE 495 + CPKD +P+PR+D+ Sbjct: 155 KACPKDPFPIPRIDQ 169 >gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] Length = 1146 Score = 151 bits (381), Expect = 6e-35 Identities = 70/144 (48%), Positives = 97/144 (67%) Frame = +1 Query: 61 DEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEFACHR 240 +EIE++NIG EE +R IG+ L E K K++Q L E D+FAW+ ED+ GLDP HR Sbjct: 62 EEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHR 121 Query: 241 LHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKKNGKV 420 + K D PVRQ++R P A I+ EV + AG + E+ EW++N+V VPKK+GKV Sbjct: 122 IPTKPDCPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV 181 Query: 421 RMCVDFTDVNRECPKDSYPMPRVD 492 RMCVDF D+N+ PKD++P+P +D Sbjct: 182 RMCVDFRDLNKASPKDNFPLPHID 205 >gb|ABD63162.1| RNase H family protein [Asparagus officinalis] Length = 1189 Score = 150 bits (379), Expect = 1e-34 Identities = 69/148 (46%), Positives = 96/148 (64%) Frame = +1 Query: 49 PKTLDEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEF 228 P T D++ VN+GDE + + I LS K L+ + E DVFAW ED+ GLDP+ Sbjct: 106 PPTEDKVIQVNMGDEHDPKPIFIAEDLSSSEKEDLISLIREYIDVFAWNYEDMPGLDPKV 165 Query: 229 ACHRLHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKK 408 A H L++ DAKPV+Q+ R RP+ E I EV +L +G +RE + +W++N+V VPKK Sbjct: 166 AMHHLNIDPDAKPVKQQQRRFRPEIMESIESEVKKLIDSGFVREEQHPDWVANIVPVPKK 225 Query: 409 NGKVRMCVDFTDVNRECPKDSYPMPRVD 492 NGKVR+C+DF D+N CPKD +P+P D Sbjct: 226 NGKVRICIDFRDLNAACPKDEFPLPITD 253 >gb|ABD63139.1| Reverse transcriptase family protein [Asparagus officinalis] Length = 1181 Score = 150 bits (378), Expect = 1e-34 Identities = 68/148 (45%), Positives = 95/148 (64%) Frame = +1 Query: 49 PKTLDEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEF 228 P T D++ +N+GDE + I LS K L+ + E DVFAW ED+ GLDP+ Sbjct: 610 PPTEDKVIQINMGDESNPKPIFIAEDLSSSEKENLISLIREYIDVFAWNYEDMPGLDPKV 669 Query: 229 ACHRLHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKK 408 A HRL++ D KPV+Q+ R RP+ E I EV +L +G +RE + +W++N+V VPKK Sbjct: 670 AMHRLNIDPDVKPVKQQQRRFRPEIMESIESEVKKLIDSGFVREEQHPDWVANIVPVPKK 729 Query: 409 NGKVRMCVDFTDVNRECPKDSYPMPRVD 492 NGKVR+C+DF D+N CPKD +P+P D Sbjct: 730 NGKVRICIDFRDLNATCPKDEFPLPITD 757 >gb|ABD63192.1| Reverse transcriptase family protein [Asparagus officinalis] Length = 1146 Score = 147 bits (371), Expect = 9e-34 Identities = 69/148 (46%), Positives = 94/148 (63%) Frame = +1 Query: 49 PKTLDEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEF 228 P T D+I +N+GDE + I L K +L+ + E DVFAW ED+ GLDP Sbjct: 441 PPTEDKIVQINMGDEANPKPIFISDSLLSNEKEELIALVKEYIDVFAWNYEDMPGLDPNV 500 Query: 229 ACHRLHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKK 408 A HRL +K DAKPV+Q+ R RP+ E I EV +L +G IRE + +WL+N++ V KK Sbjct: 501 AMHRLDIKSDAKPVKQQQRRFRPQIMEAIEAEVKKLIESGFIREEQHPDWLANIIPVMKK 560 Query: 409 NGKVRMCVDFTDVNRECPKDSYPMPRVD 492 NGK+R+C+DF D+N CPKD +P+P D Sbjct: 561 NGKIRICIDFRDLNTACPKDDFPLPITD 588