BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027333
         (497 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                157   1e-36
gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptas...   151   6e-35
gb|ABD63162.1| RNase H family protein [Asparagus officinalis]         150   1e-34
gb|ABD63139.1| Reverse transcriptase family protein [Asparagus o...   150   1e-34
gb|ABD63192.1| Reverse transcriptase family protein [Asparagus o...   147   9e-34

>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  157 bits (396), Expect = 1e-36
 Identities = 70/135 (51%), Positives = 99/135 (73%)
 Frame = +1

Query: 91  EEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEFACHRLHMKEDAKPV 270
           E++ER+ S+GS L    + ++VQFL +N DVFAWT  DV+G+DPEF CH L++  +A P 
Sbjct: 35  EDKERYFSVGSQLPALEREEVVQFLQDNIDVFAWTTYDVSGIDPEFICHHLNVSHNAMPR 94

Query: 271 RQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKKNGKVRMCVDFTDVN 450
           +Q  R    ++AE ++EEV +LK AG I+E  + EWL+N V V KKNGK R+CVDFTD+N
Sbjct: 95  KQPPRHASQEHAEAVKEEVNKLKQAGAIKEIFYPEWLANTVVVKKKNGKWRVCVDFTDLN 154

Query: 451 RECPKDSYPMPRVDE 495
           + CPKD +P+PR+D+
Sbjct: 155 KACPKDPFPIPRIDQ 169


>gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1146

 Score =  151 bits (381), Expect = 6e-35
 Identities = 70/144 (48%), Positives = 97/144 (67%)
 Frame = +1

Query: 61  DEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEFACHR 240
           +EIE++NIG EE +R   IG+ L E  K K++Q L E  D+FAW+ ED+ GLDP    HR
Sbjct: 62  EEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHR 121

Query: 241 LHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKKNGKV 420
           +  K D  PVRQ++R   P  A  I+ EV +   AG +   E+ EW++N+V VPKK+GKV
Sbjct: 122 IPTKPDCPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV 181

Query: 421 RMCVDFTDVNRECPKDSYPMPRVD 492
           RMCVDF D+N+  PKD++P+P +D
Sbjct: 182 RMCVDFRDLNKASPKDNFPLPHID 205


>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
          Length = 1189

 Score =  150 bits (379), Expect = 1e-34
 Identities = 69/148 (46%), Positives = 96/148 (64%)
 Frame = +1

Query: 49  PKTLDEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEF 228
           P T D++  VN+GDE + +   I   LS   K  L+  + E  DVFAW  ED+ GLDP+ 
Sbjct: 106 PPTEDKVIQVNMGDEHDPKPIFIAEDLSSSEKEDLISLIREYIDVFAWNYEDMPGLDPKV 165

Query: 229 ACHRLHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKK 408
           A H L++  DAKPV+Q+ R  RP+  E I  EV +L  +G +RE +  +W++N+V VPKK
Sbjct: 166 AMHHLNIDPDAKPVKQQQRRFRPEIMESIESEVKKLIDSGFVREEQHPDWVANIVPVPKK 225

Query: 409 NGKVRMCVDFTDVNRECPKDSYPMPRVD 492
           NGKVR+C+DF D+N  CPKD +P+P  D
Sbjct: 226 NGKVRICIDFRDLNAACPKDEFPLPITD 253


>gb|ABD63139.1| Reverse transcriptase family protein [Asparagus officinalis]
          Length = 1181

 Score =  150 bits (378), Expect = 1e-34
 Identities = 68/148 (45%), Positives = 95/148 (64%)
 Frame = +1

Query: 49   PKTLDEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEF 228
            P T D++  +N+GDE   +   I   LS   K  L+  + E  DVFAW  ED+ GLDP+ 
Sbjct: 610  PPTEDKVIQINMGDESNPKPIFIAEDLSSSEKENLISLIREYIDVFAWNYEDMPGLDPKV 669

Query: 229  ACHRLHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKK 408
            A HRL++  D KPV+Q+ R  RP+  E I  EV +L  +G +RE +  +W++N+V VPKK
Sbjct: 670  AMHRLNIDPDVKPVKQQQRRFRPEIMESIESEVKKLIDSGFVREEQHPDWVANIVPVPKK 729

Query: 409  NGKVRMCVDFTDVNRECPKDSYPMPRVD 492
            NGKVR+C+DF D+N  CPKD +P+P  D
Sbjct: 730  NGKVRICIDFRDLNATCPKDEFPLPITD 757


>gb|ABD63192.1| Reverse transcriptase family protein [Asparagus officinalis]
          Length = 1146

 Score =  147 bits (371), Expect = 9e-34
 Identities = 69/148 (46%), Positives = 94/148 (63%)
 Frame = +1

Query: 49  PKTLDEIEVVNIGDEEEERFTSIGSGLSECWKSKLVQFLSENRDVFAWTVEDVTGLDPEF 228
           P T D+I  +N+GDE   +   I   L    K +L+  + E  DVFAW  ED+ GLDP  
Sbjct: 441 PPTEDKIVQINMGDEANPKPIFISDSLLSNEKEELIALVKEYIDVFAWNYEDMPGLDPNV 500

Query: 229 ACHRLHMKEDAKPVRQRMRSIRPKYAEGIREEVTQLKGAGIIRETEFTEWLSNVVAVPKK 408
           A HRL +K DAKPV+Q+ R  RP+  E I  EV +L  +G IRE +  +WL+N++ V KK
Sbjct: 501 AMHRLDIKSDAKPVKQQQRRFRPQIMEAIEAEVKKLIESGFIREEQHPDWLANIIPVMKK 560

Query: 409 NGKVRMCVDFTDVNRECPKDSYPMPRVD 492
           NGK+R+C+DF D+N  CPKD +P+P  D
Sbjct: 561 NGKIRICIDFRDLNTACPKDDFPLPITD 588