BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027290
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20322.3| unnamed protein product [Vitis vinifera]               99   4e-19
ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19
ref|XP_002519054.1| pentatricopeptide repeat-containing protein,...    93   2e-17
ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
emb|CBI33242.3| unnamed protein product [Vitis vinifera]               92   4e-17

>emb|CBI20322.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/71 (64%), Positives = 57/71 (80%)
 Frame = -3

Query: 217 SSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRRR 38
           S RSVYTG+F   NLYS++SPLG P ++L P LD+WVEEGK +R VEL RII+D R R+R
Sbjct: 25  SVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKR 84

Query: 37  FTQALQVSEWM 5
           + QAL+VSEWM
Sbjct: 85  YAQALEVSEWM 95


>ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial [Vitis vinifera]
          Length = 504

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/71 (64%), Positives = 57/71 (80%)
 Frame = -3

Query: 217 SSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRRR 38
           S RSVYTG+F   NLYS++SPLG P ++L P LD+WVEEGK +R VEL RII+D R R+R
Sbjct: 25  SVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKR 84

Query: 37  FTQALQVSEWM 5
           + QAL+VSEWM
Sbjct: 85  YAQALEVSEWM 95


>ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541717|gb|EEF43265.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 485

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/70 (61%), Positives = 53/70 (75%)
 Frame = -3

Query: 214 SRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRRRF 35
           SR  Y  + +K  LYSK+SPLGDP  +L PELD WV++G  +R  EL+RII+D RKR RF
Sbjct: 3   SRYYYANRTKKVTLYSKISPLGDPNTSLVPELDNWVQDGNKVRVGELQRIIRDLRKRNRF 62

Query: 34  TQALQVSEWM 5
           TQAL+VSEWM
Sbjct: 63  TQALEVSEWM 72


>ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Vitis vinifera]
          Length = 506

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 40/72 (55%), Positives = 56/72 (77%)
 Frame = -3

Query: 220 ISSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRR 41
           IS+R+ YT ++ K +LY+K+SPLGDP  ++ PELD WV+ G  +   EL+RII D RKR+
Sbjct: 26  ISNRTYYTSRYGKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRK 85

Query: 40  RFTQALQVSEWM 5
           RF+QAL++SEWM
Sbjct: 86  RFSQALEISEWM 97


>emb|CBI33242.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 40/72 (55%), Positives = 56/72 (77%)
 Frame = -3

Query: 220 ISSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRR 41
           IS+R+ YT ++ K +LY+K+SPLGDP  ++ PELD WV+ G  +   EL+RII D RKR+
Sbjct: 26  ISNRTYYTSRYGKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRK 85

Query: 40  RFTQALQVSEWM 5
           RF+QAL++SEWM
Sbjct: 86  RFSQALEISEWM 97