BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027287
         (670 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|2...   306   2e-81
ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containi...   304   9e-81
ref|XP_003617444.1| Pentatricopeptide repeat-containing protein ...   286   3e-75
ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...   282   5e-74
ref|NP_181820.1| pentatricopeptide repeat-containing protein [Ar...   281   1e-73

>ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|222856190|gb|EEE93737.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  306 bits (784), Expect = 2e-81
 Identities = 147/223 (65%), Positives = 185/223 (82%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMI 491
           GAL QG+WIH YI KN   LN+IV+TAIIDMY KCG I++A +VFK++ K GLSCWNS+I
Sbjct: 243 GALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLI 302

Query: 490 IGLAVNGHGEEAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVI 311
           +GLA++G G EA++LFS LESS L+PD VSFIGVLTACNH+GMV+ AK Y  LM+ETY I
Sbjct: 303 LGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKI 362

Query: 310 EPTIKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAK 131
           EP+IKHY CMVDVLGRAGLLEEAE LI +M +  DAIIWGSLLS+CR++GN+EM ++AAK
Sbjct: 363 EPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAK 422

Query: 130 RLVELDPSDSGSYILLSNVYASSGRYEEAMDARRSMQERGTKK 2
           R+ ELDP++S S+ILLSNVYA+   +EEA++ R S++E+   K
Sbjct: 423 RVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDK 465



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 54/254 (21%), Positives = 105/254 (41%), Gaps = 36/254 (14%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSK---------- 521
           G   +G  +H  + K  +E +  +   I++MY  CG + EA ++F  ++           
Sbjct: 111 GLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMI 170

Query: 520 IGLS---------------------CWNSMIIGLAVNGHGEEAIQLFSDLESSGLRPDDV 404
           IGL+                      WNSMI G    G   EA++LFS ++  G++P + 
Sbjct: 171 IGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEF 230

Query: 403 SFIGVLTACNHSGMVNEAKY-YLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEALIT 227
           + + +L AC   G + + ++ +  ++   + +   +     ++D+  + G +++A   + 
Sbjct: 231 TMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIV--ITAIIDMYSKCGSIDKA-LQVF 287

Query: 226 NMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPS----DSGSYILLSNVYASSG 59
             + K     W SL+      G    G  A +   +L+ S    D  S+I +      +G
Sbjct: 288 KSAPKKGLSCWNSLILGLAMSGR---GNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAG 344

Query: 58  RYEEAMDARRSMQE 17
             + A D    M E
Sbjct: 345 MVDRAKDYFLLMSE 358


>ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
           gi|302143555|emb|CBI22116.3| unnamed protein product
           [Vitis vinifera]
          Length = 533

 Score =  304 bits (779), Expect = 9e-81
 Identities = 148/223 (66%), Positives = 181/223 (81%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMI 491
           GAL+QG+WIH YI KN  ELN IV  +IIDMYCKCG I EAF+VF+ +   GLS WN+MI
Sbjct: 271 GALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMI 330

Query: 490 IGLAVNGHGEEAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVI 311
           +GLA+NG   EAIQLFS LE S LRPDDV+F+GVLTACN+SG+V++AK Y SLM++TY I
Sbjct: 331 LGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKI 390

Query: 310 EPTIKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAK 131
           EP+IKHY CMVD LGRAGLLEEAE LI NM +  DAIIW SLLSACR HGNVE+ +RAAK
Sbjct: 391 EPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAK 450

Query: 130 RLVELDPSDSGSYILLSNVYASSGRYEEAMDARRSMQERGTKK 2
            +V+LD +DS  Y+LLSN+YA+S ++EEAM+ R SM+E+  +K
Sbjct: 451 HIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEK 493



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMI 491
           G    G  +H  + K  ++ +  +   II MY  CG + E +K F       +  WNSMI
Sbjct: 139 GLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMI 198

Query: 490 IGLAVNGHGEEAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVI 311
           +GLA  G  +E+ +LF ++    LR + VS+  +++    +G + EA      M E   I
Sbjct: 199 MGLAKCGEVDESRKLFDEMP---LR-NTVSWNSMISGYVRNGRLREALDLFGQMQEER-I 253

Query: 310 EPTIKHYGCMVDVLGRAGLLEEAEAL---ITNMSIKADAIIWGSLL 182
           +P+      +++   R G L++ E +   I   + + + I+  S++
Sbjct: 254 KPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASII 299


>ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355518779|gb|AET00403.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  286 bits (732), Expect = 3e-75
 Identities = 138/224 (61%), Positives = 174/224 (77%), Gaps = 1/224 (0%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMI 491
           GAL+ GKW+H YI +N  ELN IV+TAIIDMYCKCG +E A +VF+   + GLSCWNS+I
Sbjct: 277 GALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSII 336

Query: 490 IGLAVNGHGEEAIQLFSDLESSGL-RPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYV 314
           IGLA+NGH  EA + FS LESS L +PD VSFIGVLTAC H G +N+A+ Y  LM   Y 
Sbjct: 337 IGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYE 396

Query: 313 IEPTIKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAA 134
           IEP+IKHY C+VDVLG+AGLLEEAE LI  M +K DAIIWGSLLS+CR H NV++  RAA
Sbjct: 397 IEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAA 456

Query: 133 KRLVELDPSDSGSYILLSNVYASSGRYEEAMDARRSMQERGTKK 2
           +R+ EL+PSD+  Y+L+SNV+A+S ++EEA++ R  M+E  T+K
Sbjct: 457 QRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEK 500



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 41/241 (17%)
 Frame = -1

Query: 622 KIEL---NTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAI 452
           K+EL   + + + ++I  Y KCG I+E+  +F          WNSMI G   NG   EA+
Sbjct: 189 KLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEAL 248

Query: 451 QLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDV 272
           +LF+ ++  G    + + + +L AC H G +   K+    +   +  E  +     ++D+
Sbjct: 249 ELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNH-FELNVIVVTAIIDM 307

Query: 271 LGRAGLLEEA-----------------------------------EALITNMSIKADAII 197
             + G +E A                                     L ++  +K D++ 
Sbjct: 308 YCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVS 367

Query: 196 WGSLLSACRDHGNVEMGERAAKRLV---ELDPSDSGSYILLSNVYASSGRYEEAMDARRS 26
           +  +L+AC+  G +       + ++   E++PS    Y  + +V   +G  EEA +  + 
Sbjct: 368 FIGVLTACKHLGAINKARDYFELMMNKYEIEPSIK-HYTCIVDVLGQAGLLEEAEELIKG 426

Query: 25  M 23
           M
Sbjct: 427 M 427


>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  282 bits (721), Expect = 5e-74
 Identities = 138/223 (61%), Positives = 175/223 (78%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMI 491
           GAL+ G+W+H Y+ +   ELN IVLTAIIDMYCKCG I +A +VF+AS   GLSCWNS+I
Sbjct: 270 GALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSII 329

Query: 490 IGLAVNGHGEEAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVI 311
           IGLA+NG+  +AI+ FS LE+S L+PD VSFIGVLTAC + G V +A+ Y SLM   Y I
Sbjct: 330 IGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEI 389

Query: 310 EPTIKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAK 131
           EP+IKHY CMV+VLG+A LLEEAE LI  M +KAD IIWGSLLS+CR HGNVE+ +RAA+
Sbjct: 390 EPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQ 449

Query: 130 RLVELDPSDSGSYILLSNVYASSGRYEEAMDARRSMQERGTKK 2
           R+ EL+PSD+  Y+L+SNV A+S ++EEAM+ R  M+ER  +K
Sbjct: 450 RVCELNPSDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEK 492


>ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
           gi|4512663|gb|AAD21717.1| hypothetical protein
           [Arabidopsis thaliana] gi|20197867|gb|AAM15291.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|110738441|dbj|BAF01146.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255093|gb|AEC10187.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 559

 Score =  281 bits (718), Expect = 1e-73
 Identities = 141/223 (63%), Positives = 170/223 (76%)
 Frame = -1

Query: 670 GALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMI 491
           GA EQG+WIH YI +N+ ELN+IV+TA+IDMYCKCG IEE   VF+ + K  LSCWNSMI
Sbjct: 272 GASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMI 331

Query: 490 IGLAVNGHGEEAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVI 311
           +GLA NG  E A+ LFS+LE SGL PD VSFIGVLTAC HSG V+ A  +  LM E Y+I
Sbjct: 332 LGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMI 391

Query: 310 EPTIKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAK 131
           EP+IKHY  MV+VLG AGLLEEAEALI NM ++ D +IW SLLSACR  GNVEM +RAAK
Sbjct: 392 EPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAK 451

Query: 130 RLVELDPSDSGSYILLSNVYASSGRYEEAMDARRSMQERGTKK 2
            L +LDP ++  Y+LLSN YAS G +EEA++ R  M+ER  +K
Sbjct: 452 CLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEK 494



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
 Frame = -1

Query: 619 IELNTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFS 440
           I  + +   ++I  + KCG I++A  +F    +     WNSMI G   NG  ++A+ +F 
Sbjct: 188 IGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFR 247

Query: 439 DLESSGLRPDDVSFIGVLTACNHSGMVNEAKY-YLSLMTETYVIEPTIKHYGCMVDVLGR 263
           +++   ++PD  + + +L AC + G   + ++ +  ++   + +   +     ++D+  +
Sbjct: 248 EMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIV--VTALIDMYCK 305

Query: 262 AGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPS----DSGS 95
            G +EE    +   + K     W S++    ++G     ERA     EL+ S    DS S
Sbjct: 306 CGCIEEG-LNVFECAPKKQLSCWNSMILGLANNG---FEERAMDLFSELERSGLEPDSVS 361

Query: 94  YILLSNVYASSGRYEEAMDARRSMQER 14
           +I +    A SG    A +  R M+E+
Sbjct: 362 FIGVLTACAHSGEVHRADEFFRLMKEK 388



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
 Frame = -1

Query: 652 KWIHAYINKNKIELNTIVLTAIIDMYCKC-GRIEEAFKVFKASSKIGLSCWNSMIIGLAV 476
           K IHA + K  +  +T+  + ++   C     +  A+ VF   +      WN++I G + 
Sbjct: 42  KQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSR 101

Query: 475 NGHGEEAIQLFSDL--ESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPT 302
           +   E AI +F D+   S  ++P  +++  V  A    G   + +    ++ +  + + +
Sbjct: 102 SSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDS 161

Query: 301 IKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLV 122
                 M+ +    G L EA  +   M I  D + W S++      G ++     A+ L 
Sbjct: 162 FIR-NTMLHMYVTCGCLIEAWRIFLGM-IGFDVVAWNSMIMGFAKCGLIDQ----AQNLF 215

Query: 121 ELDPSDSG-SYILLSNVYASSGRYEEAMDARRSMQERGTK 5
           +  P  +G S+  + + +  +GR+++A+D  R MQE+  K
Sbjct: 216 DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVK 255