BLASTX nr result
ID: Coptis24_contig00027265
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027265 (239 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFK40065.1| unknown [Medicago truncatula] 69 3e-10 ref|XP_003612151.1| F-box [Medicago truncatula] gi|355513486|gb|... 69 3e-10 ref|XP_003610871.1| F-box family protein [Medicago truncatula] g... 67 2e-09 ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g... 67 2e-09 ref|XP_003612244.1| F-box protein [Medicago truncatula] gi|35551... 67 2e-09 >gb|AFK40065.1| unknown [Medicago truncatula] Length = 479 Score = 69.3 bits (168), Expect = 3e-10 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Frame = +3 Query: 12 KYDVVGSCNGLVCLASPVFCDPAYVCNPVIGEYITLPLSNKG---MGFQIASGIGFDQSA 182 K+D+V SCNGL+CL+ P F +P +CNPV GE+I LP S + Q +G GF Sbjct: 167 KFDIVNSCNGLLCLSDPSFGNPIVICNPVTGEFIRLPESTTNRTRVRMQGQAGFGFQPKT 226 Query: 183 NEYKVV 200 NEYKV+ Sbjct: 227 NEYKVI 232 >ref|XP_003612151.1| F-box [Medicago truncatula] gi|355513486|gb|AES95109.1| F-box [Medicago truncatula] Length = 480 Score = 69.3 bits (168), Expect = 3e-10 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Frame = +3 Query: 12 KYDVVGSCNGLVCLASPVFCDPAYVCNPVIGEYITLPLSNKG---MGFQIASGIGFDQSA 182 K+D+V SCNGL+CL+ P F +P +CNPV GE+I LP S + Q +G GF Sbjct: 167 KFDIVNSCNGLLCLSDPSFGNPIVICNPVTGEFIRLPESTTNRTRVRMQGQAGFGFQPKT 226 Query: 183 NEYKVV 200 NEYKV+ Sbjct: 227 NEYKVI 232 >ref|XP_003610871.1| F-box family protein [Medicago truncatula] gi|355512206|gb|AES93829.1| F-box family protein [Medicago truncatula] Length = 503 Score = 67.0 bits (162), Expect = 2e-09 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Frame = +3 Query: 12 KYDVVGSCNGLVCLASPVFCDPAYVCNPVIGEYITLPLSNKG---MGFQIASGIGFDQSA 182 K+++V SCNGL+CL+ P F +P +CNP+ GE+I LP S +G Q + GF Sbjct: 221 KFNIVNSCNGLLCLSDPYFGNPLVICNPITGEFIRLPESTANQTRVGRQGRAAFGFQPKT 280 Query: 183 NEYKVV 200 NEYKV+ Sbjct: 281 NEYKVI 286 >ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa] Length = 408 Score = 67.0 bits (162), Expect = 2e-09 Identities = 29/67 (43%), Positives = 43/67 (64%) Frame = +3 Query: 12 KYDVVGSCNGLVCLASPVFCDPAYVCNPVIGEYITLPLSNKGMGFQIASGIGFDQSANEY 191 +++VVGSCNGL+CL+ +F D Y+ NP G Y LP S + ++ G GF+ NEY Sbjct: 120 EFEVVGSCNGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTNEY 179 Query: 192 KVVRTIF 212 KV+R ++ Sbjct: 180 KVIRIVY 186 >ref|XP_003612244.1| F-box protein [Medicago truncatula] gi|355513579|gb|AES95202.1| F-box protein [Medicago truncatula] Length = 476 Score = 66.6 bits (161), Expect = 2e-09 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Frame = +3 Query: 12 KYDVVGSCNGLVCLASPVFCDPAYVCNPVIGEYITLP--LSNKGMGFQIAS-GIGFDQSA 182 K+D+V SCNGL+CL+ P +P+ +CNPV GE+I LP +N+ + G GF + Sbjct: 173 KFDIVNSCNGLLCLSEPTTGNPSVICNPVTGEFIRLPEATTNRTRVRMVGQVGFGFQPNT 232 Query: 183 NEYKVVR 203 NEYKV+R Sbjct: 233 NEYKVIR 239