BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027263
         (1653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABH88068.1| photosystem II protein D1 [Phaseolus vulgaris]         693   0.0  
gb|AAQ67339.1| photosystem II thylakoid membrane protein [Glycin...   692   0.0  
ref|YP_002836070.1| photosystem II protein D1 [Megaleranthis san...   690   0.0  
ref|YP_636279.1| photosystem II protein D1 [Eucalyptus globulus ...   689   0.0  
gb|AFU95416.1| PsbA, partial (chloroplast) [Podocalyx loranthoides]   689   0.0  

>gb|ABH88068.1| photosystem II protein D1 [Phaseolus vulgaris]
          Length = 359

 Score =  693 bits (1789), Expect = 0.0
 Identities = 339/357 (94%), Positives = 342/357 (95%)
 Frame = -3

Query: 1123 QDFTMTAILERRESQSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP 944
            QDFTMTAILERRES+SLWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP
Sbjct: 3    QDFTMTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP 62

Query: 943  PVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIV 764
            PVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIV
Sbjct: 63   PVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIV 122

Query: 763  LHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXVFLIYPIGQGSFSDGMPLGI 584
            LHFLLGVACYMGREWELSFRLGMRPWI             VFLIYPIGQGSFSDGMPLGI
Sbjct: 123  LHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGI 182

Query: 583  SGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG 404
            SGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG
Sbjct: 183  SGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG 242

Query: 403  YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 224
            YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Sbjct: 243  YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 302

Query: 223  LNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 53
            LNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAA+E PS NG
Sbjct: 303  LNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAMEAPSVNG 359


>gb|AAQ67339.1| photosystem II thylakoid membrane protein [Glycine max]
          Length = 359

 Score =  692 bits (1787), Expect = 0.0
 Identities = 338/357 (94%), Positives = 342/357 (95%)
 Frame = -3

Query: 1123 QDFTMTAILERRESQSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP 944
            QDFTMTAILERRES+SLWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP
Sbjct: 3    QDFTMTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAP 62

Query: 943  PVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIV 764
            PVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIV
Sbjct: 63   PVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIV 122

Query: 763  LHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXVFLIYPIGQGSFSDGMPLGI 584
            LHFLLGVACYMGREWELSFRLGMRPWI             VFLIYPIGQGSFSDGMPLGI
Sbjct: 123  LHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGI 182

Query: 583  SGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG 404
            SGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG
Sbjct: 183  SGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG 242

Query: 403  YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 224
            YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Sbjct: 243  YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 302

Query: 223  LNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 53
            LNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAA++ PS NG
Sbjct: 303  LNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAIDAPSING 359


>ref|YP_002836070.1| photosystem II protein D1 [Megaleranthis saniculifolia]
            gi|226933862|gb|ACO91995.1| photosystem II protein D1
            [Megaleranthis saniculifolia]
          Length = 353

 Score =  690 bits (1780), Expect = 0.0
 Identities = 339/353 (96%), Positives = 340/353 (96%)
 Frame = -3

Query: 1111 MTAILERRESQSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 932
            MTAILERRES+SLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1    MTAILERRESESLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 931  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 752
            DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61   DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 751  LGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTF 572
            LGVACYMGREWELSFRLGMRPWI             VFLIYPIGQGSFSDGMPLGISGTF
Sbjct: 121  LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 571  NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 392
            NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Sbjct: 181  NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240

Query: 391  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 212
            QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF
Sbjct: 241  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 300

Query: 211  NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 53
            NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG
Sbjct: 301  NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 353


>ref|YP_636279.1| photosystem II protein D1 [Eucalyptus globulus subsp. globulus]
            gi|110227060|ref|YP_665539.1| photosystem II protein D1
            [Populus alba] gi|134093178|ref|YP_001109480.1|
            photosystem II protein D1 [Populus trichocarpa]
            gi|309322432|ref|YP_003933945.1| photosystem II protein
            D1 [Eucalyptus grandis] gi|326909373|ref|YP_004327642.1|
            photosystem II protein D1 [Hevea brasiliensis]
            gi|374249684|ref|YP_005089314.1| psbA gene product
            (chloroplast) [Silene vulgaris]
            gi|374249849|ref|YP_005089477.1| psbA gene product
            (chloroplast) [Silene conica]
            gi|374249930|ref|YP_005089557.1| psbA gene product
            (chloroplast) [Silene latifolia]
            gi|548609|sp|P36491.2|PSBA_POPDE RecName:
            Full=Photosystem Q(B) protein; AltName: Full=32 kDa
            thylakoid membrane protein; AltName: Full=Photosystem II
            protein D1; Flags: Precursor
            gi|122219195|sp|Q49L18.1|PSBA_EUCGG RecName:
            Full=Photosystem Q(B) protein; AltName: Full=32 kDa
            thylakoid membrane protein; AltName: Full=Photosystem II
            protein D1; Flags: Precursor
            gi|122243420|sp|Q14FH6.1|PSBA_POPAL RecName:
            Full=Photosystem Q(B) protein; AltName: Full=32 kDa
            thylakoid membrane protein; AltName: Full=Photosystem II
            protein D1; Flags: Precursor
            gi|190360077|sp|A4GYN9.1|PSBA_POPTR RecName:
            Full=Photosystem Q(B) protein; AltName: Full=32 kDa
            thylakoid membrane protein; AltName: Full=Photosystem II
            protein D1; Flags: Precursor gi|463209|emb|CAA55040.1| D1
            protein [Populus deltoides] gi|60460789|gb|AAX21009.1|
            photosystem II protein D1 [Eucalyptus globulus subsp.
            globulus] gi|62149327|dbj|BAD93469.1| photosystem II
            protein D1 [Silene latifolia]
            gi|109945498|dbj|BAE97186.1| Photosystem II protein D1
            [Populus alba] gi|118485940|gb|ABK94815.1| unknown
            [Populus trichocarpa] gi|133712040|gb|ABO36683.1|
            photosystem II D1-reaction-center protein [Populus
            trichocarpa] gi|290488448|gb|ADD30608.1| photosystem II
            protein D1 [Ficus sp. Moore 315]
            gi|308223266|gb|ADO23574.1| photosystem II protein D1
            [Eucalyptus grandis] gi|308523487|gb|ADO33537.1|
            photosystem II protein D1 [Hevea brasiliensis]
            gi|329755420|gb|AEC03984.1| photosystem II protein D1
            (chloroplast) [Silene conica] gi|329755501|gb|AEC04064.1|
            photosystem II protein D1 (chloroplast) [Silene
            latifolia] gi|329755666|gb|AEC04227.1| photosystem II
            protein D1 (chloroplast) [Silene vulgaris]
            gi|408901298|gb|AFU95383.1| PsbA, partial (chloroplast)
            [Averrhoa carambola] gi|408901350|gb|AFU95409.1| PsbA,
            partial (chloroplast) [Medusagyne oppositifolia]
          Length = 353

 Score =  689 bits (1779), Expect = 0.0
 Identities = 338/353 (95%), Positives = 340/353 (96%)
 Frame = -3

Query: 1111 MTAILERRESQSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 932
            MTAILERRES+SLWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1    MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 931  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 752
            DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61   DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 751  LGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTF 572
            LGVACYMGREWELSFRLGMRPWI             VFLIYPIGQGSFSDGMPLGISGTF
Sbjct: 121  LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 571  NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 392
            NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Sbjct: 181  NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240

Query: 391  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 212
            QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF
Sbjct: 241  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 300

Query: 211  NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 53
            NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG
Sbjct: 301  NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 353


>gb|AFU95416.1| PsbA, partial (chloroplast) [Podocalyx loranthoides]
          Length = 353

 Score =  689 bits (1778), Expect = 0.0
 Identities = 337/353 (95%), Positives = 340/353 (96%)
 Frame = -3

Query: 1111 MTAILERRESQSLWGRFCNWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 932
            MTAILERRES+SLWGRFCNW+TSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1    MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 931  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 752
            DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61   DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 751  LGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXVFLIYPIGQGSFSDGMPLGISGTF 572
            LGVACYMGREWELSFRLGMRPWI             VFLIYPIGQGSFSDGMPLGISGTF
Sbjct: 121  LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 571  NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 392
            NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Sbjct: 181  NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240

Query: 391  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 212
            QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPV+GIWFTALGISTMAFNLNGF
Sbjct: 241  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFNLNGF 300

Query: 211  NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 53
            NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG
Sbjct: 301  NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSTNG 353