BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027247
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519998.1| pentatricopeptide repeat-containing protein,...   112   2e-23
ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]   110   9e-23
ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containi...   108   4e-22
ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containi...   104   6e-21

>ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540762|gb|EEF42322.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 498

 Score =  112 bits (281), Expect = 2e-23
 Identities = 57/98 (58%), Positives = 74/98 (75%)
 Frame = +2

Query: 158 QELSHDMYNSLIRSQCHKGDIDESMSLLCRMDALGFRLTSLSYICLIECLGSVGRTLEAD 337
           QELS + YNS I   C  GD+D++M+LL  M +LGF  +SLSY CLIE L SVGRTLEA+
Sbjct: 17  QELSGESYNSCICDCCKVGDVDKAMTLLADMQSLGFHPSSLSYTCLIETLLSVGRTLEAE 76

Query: 338 AIFQEMKFSGFKPRVRAYNVLLRVFLRKGLSRLAGKVL 451
           A++QEM   G KPR++ YN++LR FL+KGL R+A +VL
Sbjct: 77  ALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVL 114


>ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  110 bits (276), Expect = 9e-23
 Identities = 59/102 (57%), Positives = 74/102 (72%)
 Frame = +2

Query: 158 QELSHDMYNSLIRSQCHKGDIDESMSLLCRMDALGFRLTSLSYICLIECLGSVGRTLEAD 337
           +ELS  +YN+ IR  C  GD+D++M LL +M+ALGF L+  SY  +IE LGSVGRTLEA+
Sbjct: 19  EELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAE 78

Query: 338 AIFQEMKFSGFKPRVRAYNVLLRVFLRKGLSRLAGKVLDEMN 463
           AIF+EM   G K  +R YNV+LR  LRKGL  LA KVL EM+
Sbjct: 79  AIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMD 120


>emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score =  110 bits (276), Expect = 9e-23
 Identities = 59/102 (57%), Positives = 74/102 (72%)
 Frame = +2

Query: 158 QELSHDMYNSLIRSQCHKGDIDESMSLLCRMDALGFRLTSLSYICLIECLGSVGRTLEAD 337
           +ELS  +YN+ IR  C  GD+D++M LL +M+ALGF L+  SY  +IE LGSVGRTLEA+
Sbjct: 38  EELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAE 97

Query: 338 AIFQEMKFSGFKPRVRAYNVLLRVFLRKGLSRLAGKVLDEMN 463
           AIF+EM   G K  +R YNV+LR  LRKGL  LA KVL EM+
Sbjct: 98  AIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMD 139


>ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 881

 Score =  108 bits (270), Expect = 4e-22
 Identities = 55/103 (53%), Positives = 75/103 (72%)
 Frame = +2

Query: 158 QELSHDMYNSLIRSQCHKGDIDESMSLLCRMDALGFRLTSLSYICLIECLGSVGRTLEAD 337
           +ELS ++ + LI   C +GD+D +MSLL +M+A GF L+S SY CLIE LG+VGRT EAD
Sbjct: 80  EELSSNLCSQLICECCKEGDLDRAMSLLSQMEAKGFHLSSTSYACLIEALGNVGRTSEAD 139

Query: 338 AIFQEMKFSGFKPRVRAYNVLLRVFLRKGLSRLAGKVLDEMNE 466
            +F+EM   G+KP++  Y+ LLR FL+KGL  LA  VL EM++
Sbjct: 140 MLFKEMVCYGYKPKLNLYHSLLRGFLKKGLLGLANGVLKEMDD 182


>ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 554

 Score =  104 bits (260), Expect = 6e-21
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 158 QELSHDMYNSLIRSQCHKGDIDESMSLLCRMDALGFRLTSLSYICLIECLGSVGRTLEAD 337
           +ELS ++ +  I   C +GD+D +MSLL +M+A GF L+S +Y CLIE LG+VGRT EAD
Sbjct: 77  EELSSNLCSQFICECCKEGDLDRAMSLLSQMEAKGFHLSSTAYACLIEALGNVGRTSEAD 136

Query: 338 AIFQEMKFSGFKPRVRAYNVLLRVFLRKGLSRLAGKVLDEMN 463
            +F+EM   G+KP++  Y  LLR FL+KGL  LA  VL EM+
Sbjct: 137 MLFKEMICDGYKPKLNFYTSLLRGFLKKGLLGLANGVLKEMD 178