BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027193
         (603 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]   230   2e-58
ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat...   229   3e-58
ref|XP_003522318.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   205   6e-51
ref|NP_177580.1| pentatricopeptide repeat-containing protein [Ar...   201   6e-50
ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containi...   193   2e-47

>emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  230 bits (586), Expect = 2e-58
 Identities = 112/190 (58%), Positives = 143/190 (75%), Gaps = 9/190 (4%)
 Frame = +3

Query: 60   LVIPNEVTFIGVLMACSHAGRVEEGWRHLNSMSKKHGLKPRISHYGCMVDLLCRAGHLNE 239
            LV+PN+VTF+GVLMACSHAG VEEG +H  SM + + L+PRISH+GCMVDLLCRAG L E
Sbjct: 861  LVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTE 920

Query: 240  AYALIMNMPLQPNAVVWRTLHGACSLQG--------NIELGAKVRRRLLQLDPSYAGDDV 395
            AY  I+ MP++PNAVVWRTL GACSLQG        NI++ ++ RR+LL+L+PS+ GD+V
Sbjct: 921  AYEFILKMPVRPNAVVWRTLLGACSLQGDSNGNGNSNIKIXSEARRQLLELEPSHVGDNV 980

Query: 396  TMSNTYASAGLWDEKMAVRAR-KHRRSPGCSMIELGDRVHEFVAADKNHPLWREIYEVLH 572
             MSN YA+ G+WD+KM VR + K RR PGCS IE+G  + EFVAAD  HP   +IYE+L 
Sbjct: 981  IMSNLYAAKGMWDKKMLVRNQIKQRRDPGCSSIEVGIDIKEFVAADDQHPCMPQIYEILD 1040

Query: 573  SMIKNTKVSD 602
             + +  + SD
Sbjct: 1041 HLTRTMRASD 1050


>ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74400-like [Vitis vinifera]
          Length = 482

 Score =  229 bits (584), Expect = 3e-58
 Identities = 112/190 (58%), Positives = 143/190 (75%), Gaps = 9/190 (4%)
 Frame = +3

Query: 60  LVIPNEVTFIGVLMACSHAGRVEEGWRHLNSMSKKHGLKPRISHYGCMVDLLCRAGHLNE 239
           LV+PN+VTF+GVLMACSHAG VEEG +H  SM + + L+PRISH+GCMVDLLCRAG L E
Sbjct: 283 LVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTE 342

Query: 240 AYALIMNMPLQPNAVVWRTLHGACSLQG--------NIELGAKVRRRLLQLDPSYAGDDV 395
           AY  I+ MP++PNAVVWRTL GACSLQG        NI++ ++ RR+LL+L+PS+ GD+V
Sbjct: 343 AYEFILKMPVRPNAVVWRTLLGACSLQGDSNGNGNSNIKIYSEARRQLLELEPSHVGDNV 402

Query: 396 TMSNTYASAGLWDEKMAVRAR-KHRRSPGCSMIELGDRVHEFVAADKNHPLWREIYEVLH 572
            MSN YA+ G+WD+KM VR + K RR PGCS IE+G  + EFVAAD  HP   +IYE+L 
Sbjct: 403 IMSNLYAAKGMWDKKMLVRNQIKQRRDPGCSSIEVGIDIKEFVAADDQHPCMPQIYEILD 462

Query: 573 SMIKNTKVSD 602
            + +  + SD
Sbjct: 463 HLTRTMRASD 472


>ref|XP_003522318.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74400-like [Glycine max]
          Length = 333

 Score =  205 bits (521), Expect = 6e-51
 Identities = 98/164 (59%), Positives = 127/164 (77%), Gaps = 2/164 (1%)
 Frame = +3

Query: 60  LVIPNEVTFIGVLMACSHAGRVEEGWRHLNSMSKKHGLKPRISHYGCMVDLLCRAG-HLN 236
           ++ PN+VTFIGVLMACSHAG VEEG  H  SMS+ +G++PR +H+GCMVDLLCR G HL 
Sbjct: 166 VLTPNDVTFIGVLMACSHAGMVEEGKLHFRSMSEVYGIEPREAHFGCMVDLLCRVGGHLR 225

Query: 237 EAYALIMNMPLQPNAVVWRTLHGACSLQGNIELGAKVRRRLLQLDPSYAGDDVTMSNTYA 416
           ++Y  IM MP+ PNAVVWRTL GACS++G +EL A+VR++LL+LD  Y  D V MSN YA
Sbjct: 226 DSYDFIMEMPVPPNAVVWRTLLGACSVRGELELAAEVRQKLLKLDLGYVVDSVAMSNIYA 285

Query: 417 SAGLWDEKMAVRAR-KHRRSPGCSMIELGDRVHEFVAADKNHPL 545
           + G+W++K+ V+ + K  R+PGCS IE+G  V EFV +D NHPL
Sbjct: 286 NKGMWNKKIVVKNQIKQSRAPGCSSIEVGSGVSEFVVSDDNHPL 329


>ref|NP_177580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169846|sp|Q9CA73.1|PP119_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g74400 gi|12324820|gb|AAG52382.1|AC011765_34
           hypothetical protein; 20273-21661 [Arabidopsis thaliana]
           gi|332197466|gb|AEE35587.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  201 bits (512), Expect = 6e-50
 Identities = 98/178 (55%), Positives = 128/178 (71%), Gaps = 4/178 (2%)
 Frame = +3

Query: 60  LVIPNEVTFIGVLMACSHAGRVEEGWRHLNSMSKKHGLKPRISHYGCMVDLLCRAGHLNE 239
           ++ PN+VTFIGVLMACSH+G VEEG RH  SM   + LKPR +H+GCMVDL CR+GHL +
Sbjct: 271 VITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKD 330

Query: 240 AYALIMNMPLQPNAVVWRTLHGACSLQGNIELGAKVRRRLLQLDPSYAGDDVTMSNTYAS 419
           A+  I  MP++PN V+WRTL GACSL GN+ELG +V+RR+ +LD  + GD V +SN YAS
Sbjct: 331 AHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYAS 390

Query: 420 AGLWDEKMAVRAR-KHRRSPGCSMIELGDRVHEFVAADKNHP---LWREIYEVLHSMI 581
            G+WDEK  +R R + RR PG S IELG  ++EFV+   N+    +  EI EVL  ++
Sbjct: 391 KGMWDEKSKMRDRVRKRRMPGKSWIELGSIINEFVSGPDNNDEQLMMGEISEVLRCLV 448


>ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  193 bits (490), Expect = 2e-47
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 4/180 (2%)
 Frame = +3

Query: 69   PNEVTFIGVLMACSHAGRVEEGWRHLNSMSKKHGLKPRISHYGCMVDLLCRAGHLNEAYA 248
            P +VTFIGVL+ACSH   VEEG RH  SM++ +G+ PRI HYGCMVDLL RAG ++EAY 
Sbjct: 472  PTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQ 531

Query: 249  LIMNMPLQPNAVVWRTLHGACSLQGNIELGAKVRRRLLQLDPSYAGDDVTMSNTYASAGL 428
             I NMP++PNAVVWR L  AC++  N+E+G +  ++++ LDP ++G+ + +SNTYAS G 
Sbjct: 532  FIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQ 591

Query: 429  WDEKMAVRARKHRRS----PGCSMIELGDRVHEFVAADKNHPLWREIYEVLHSMIKNTKV 596
            W     VR     +     PGCS+IEL   + EF A D  HP   EIYE +H MI+N K+
Sbjct: 592  WKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKM 651