BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027071
         (1009 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II tra...   278   1e-72
ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II tra...   277   3e-72
ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II tra...   275   1e-71
ref|NP_197491.2| mediator of RNA polymerase II transcription sub...   267   3e-69
ref|XP_003556072.1| PREDICTED: mediator of RNA polymerase II tra...   266   8e-69

>ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31
           [Vitis vinifera] gi|297737389|emb|CBI26590.3| unnamed
           protein product [Vitis vinifera]
          Length = 198

 Score =  278 bits (711), Expect = 1e-72
 Identities = 135/193 (69%), Positives = 153/193 (79%), Gaps = 2/193 (1%)
 Frame = -3

Query: 995 EDRNEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 816
           ++ +   +TP++P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY
Sbjct: 5   KESDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 64

Query: 815 LKYLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNN 636
           LKYLQYWQ+PEY+KFIMYPHCL+FLELLQNANFRNAMAHPGSKELAHRQQFF+WKNYRNN
Sbjct: 65  LKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNN 124

Query: 635 RLKHIVPRPLXXXXXXXXXXXXXSTLV--STSMVSVAPAQALSPMQYGVXXXXXXXPKND 462
           RLKHI+P+PL                   +T  V+ A + ALSPMQYG+        KND
Sbjct: 125 RLKHILPKPLPEPLAGTPAPGPPPQSAPPTTIAVTSAGSPALSPMQYGI-PAGSSLSKND 183

Query: 461 MRNIGGDRRKRKE 423
           MRN   DRRKRK+
Sbjct: 184 MRNSAIDRRKRKK 196


>ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Cucumis sativus]
          Length = 206

 Score =  277 bits (708), Expect = 3e-72
 Identities = 137/200 (68%), Positives = 155/200 (77%), Gaps = 7/200 (3%)
 Frame = -3

Query: 989 RNEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 810
           + E+ + PS+P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 8   KEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67

Query: 809 YLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRL 630
           YLQYWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHPG+KELAHRQQF+FWKNYRNNRL
Sbjct: 68  YLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRL 127

Query: 629 KHIVPRPLXXXXXXXXXXXXXSTLV------STSMVSVAPAQALSPMQYGVXXXXXXXPK 468
           KHI+PRPL                       + +M +   A ALSPMQYG+       PK
Sbjct: 128 KHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPMQYGI-PPGPGLPK 186

Query: 467 NDMRNIGGDRRKRK-ERSVS 411
           NDM+  G DRRKRK ERS++
Sbjct: 187 NDMKGAGIDRRKRKHERSMT 206


>ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Cucumis sativus]
          Length = 206

 Score =  275 bits (704), Expect = 1e-71
 Identities = 136/200 (68%), Positives = 155/200 (77%), Gaps = 7/200 (3%)
 Frame = -3

Query: 989 RNEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLK 810
           + E+ + PS+P N+YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLK
Sbjct: 8   KEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLK 67

Query: 809 YLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNNRL 630
           YLQYWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHPG+KELAHRQQF+FWKNYRNNRL
Sbjct: 68  YLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRL 127

Query: 629 KHIVPRPLXXXXXXXXXXXXXSTLV------STSMVSVAPAQALSPMQYGVXXXXXXXPK 468
           KHI+PRPL                       + +M +   A ALSP+QYG+       PK
Sbjct: 128 KHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGI-PPGPGLPK 186

Query: 467 NDMRNIGGDRRKRK-ERSVS 411
           NDM+  G DRRKRK ERS++
Sbjct: 187 NDMKGAGIDRRKRKHERSMT 206


>ref|NP_197491.2| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis
           thaliana] gi|38258620|sp|Q8VYB1.1|MED31_ARATH RecName:
           Full=Mediator of RNA polymerase II transcription subunit
           31; AltName: Full=Mediator complex subunit 31; AltName:
           Full=Mediator complex subunit SOH1
           gi|18176433|gb|AAL60043.1| putative SOH1 protein
           [Arabidopsis thaliana] gi|27754239|gb|AAO22573.1|
           putative SOH1 protein [Arabidopsis thaliana]
           gi|332005381|gb|AED92764.1| mediator of RNA polymerase
           II transcription subunit 31 [Arabidopsis thaliana]
          Length = 196

 Score =  267 bits (682), Expect = 3e-69
 Identities = 132/195 (67%), Positives = 147/195 (75%), Gaps = 4/195 (2%)
 Frame = -3

Query: 995 EDRNED-TETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIG 819
           E+  +D +E PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDEAFIG
Sbjct: 5   EEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIG 64

Query: 818 YLKYLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRN 639
           YLKYLQYWQRPEY+KFIMYPHCLYFLELLQN NFR AMAHP +KELAHRQQF++WKNYRN
Sbjct: 65  YLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRN 124

Query: 638 NRLKHIVPRPLXXXXXXXXXXXXXSTLVSTSMVSVAPAQALSPMQYGVXXXXXXXPKNDM 459
           NRLKHI+PRPL             ++L      + A + ALSPMQY          KND 
Sbjct: 125 NRLKHILPRPLPEPVPPQPPVAPSTSLPPAPSATAALSPALSPMQYN-----NMLSKNDT 179

Query: 458 RNIGG---DRRKRKE 423
           RN+G    DRRKRK+
Sbjct: 180 RNMGATGIDRRKRKK 194


>ref|XP_003556072.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           31-like [Glycine max]
          Length = 206

 Score =  266 bits (679), Expect = 8e-69
 Identities = 137/202 (67%), Positives = 150/202 (74%), Gaps = 12/202 (5%)
 Frame = -3

Query: 995 EDRNEDTETPSTPPNLYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 816
           E  N    +PS+P N+YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY
Sbjct: 6   ESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGY 65

Query: 815 LKYLQYWQRPEYLKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFFFWKNYRNN 636
           LKYLQYWQRPEY+KFIMYPHCLYFLELLQNANFRNAMAHP +KELAHRQQF+FWKNYRNN
Sbjct: 66  LKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNN 125

Query: 635 RLKHIVPR----------PLXXXXXXXXXXXXXSTLVSTSM-VSVAPAQALSPMQYGVXX 489
           RLKHI+PR          P                + +TS+ V+ AP+QA SPM Y V  
Sbjct: 126 RLKHILPRSLPEPATPAAPAPASTPSQAPVSALPPVPATSVAVTAAPSQAPSPMPY-VMP 184

Query: 488 XXXXXPKNDMRNIGGD-RRKRK 426
                 KNDMRN   D RRKRK
Sbjct: 185 PGSGLAKNDMRNPTVDNRRKRK 206