BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027062
         (755 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   277   2e-72
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   271   1e-70
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   261   1e-67
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...   258   1e-66
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi...   258   1e-66

>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  277 bits (708), Expect = 2e-72
 Identities = 134/218 (61%), Positives = 159/218 (72%)
 Frame = +1

Query: 49  IVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCESCGTAEPGKC 228
           I+D  I+ IRF +AT  E            H  QLTNPFLGLPLE GKCESCGTAEPG+C
Sbjct: 8   ILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEPGQC 67

Query: 229 DGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSFCLD 408
           +GHFGYIE PI IYHP HVSELKR+LS +CLKCL+++++K+  N G       PC  C D
Sbjct: 68  EGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNN-GITEQLLAPC--CQD 124

Query: 409 IPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILLPCEVLEIL 588
            PQ+ V EF+ T+G  FLELK+ +RS P +GFW+FL +YGYRYG   SRILLP EV+EIL
Sbjct: 125 SPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVMEIL 184

Query: 589 NKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702
            +  EDTRKKL  KGYF QDGYILQ LPVPPNCLS+P+
Sbjct: 185 RRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPD 222


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  271 bits (692), Expect = 1e-70
 Identities = 133/226 (58%), Positives = 162/226 (71%)
 Frame = +1

Query: 22  MDENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCES 201
           MDEN+    I D  IT IRF +AT  E            H  QLTNPFLGLPLE GKCES
Sbjct: 1   MDENSQ-SSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCES 59

Query: 202 CGTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 381
           CGT+EPGKC+GHFG+I  PI IYHP H+SELKR+LS +CLKCL+LKR KI+  + S+  +
Sbjct: 60  CGTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQ--IKSNGVA 117

Query: 382 NIPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRIL 561
               S C +  QI + E K TDG  FLELK+ +RS   +G WNFL++YG+RYG+  +R L
Sbjct: 118 ERLLSCCEECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPL 177

Query: 562 LPCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIP 699
           LPCEV++IL +   +TRKKLSGKGYF QDGYILQ+LPVPPNCLS+P
Sbjct: 178 LPCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVP 223


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  261 bits (667), Expect = 1e-67
 Identities = 124/226 (54%), Positives = 159/226 (70%)
 Frame = +1

Query: 25  DENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCESC 204
           D+ N     ++  +  I+F +AT  E            H  QLTNPFLGLPLE GKCESC
Sbjct: 3   DKENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESC 62

Query: 205 GTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSN 384
           GT+EPGKC+GHFGYIE PI IYHP HVSELKR+LS +CLKCL+LK  KI+ +  ++R   
Sbjct: 63  GTSEPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKIKSSGVAER--- 119

Query: 385 IPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILL 564
              S C +  QI + E KTTDG   L+LK+ +R    +GFWNFL++YG+RYG+  +R LL
Sbjct: 120 -LFSCCEEAAQISIKEVKTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLL 178

Query: 565 PCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702
           PCEVLE+L +  +DTRKKL+ KGYF QDGYI++ +PVPPNCLS+P+
Sbjct: 179 PCEVLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPD 224


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score =  258 bits (658), Expect = 1e-66
 Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 1/228 (0%)
 Frame = +1

Query: 22  MDENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCES 201
           M+E+    P+ +  I  I+ S++T+DE            HP QL NPFLGLPLE+GKCES
Sbjct: 1   MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 202 CGTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 381
           CG +E GKC+GHFGYIE P+ IYHPCHV+EL+++L+ VCLKCLR+K+ K++Q  G D  S
Sbjct: 61  CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120

Query: 382 NIPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRI 558
            + C +C D+P + + E KT DG   LELK+  R     G WNFLDKYG+ + G    R 
Sbjct: 121 ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 559 LLPCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702
           LLP E L IL K  E+T++KL+ +GY +Q GY+++ LPVPPNCL IPE
Sbjct: 181 LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPE 228


>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
          Length = 1867

 Score =  258 bits (658), Expect = 1e-66
 Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 1/228 (0%)
 Frame = +1

Query: 22  MDENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCES 201
           M+E+    P+ +  I  I+ S++T+DE            HP QL NPFLGLPLE+GKCES
Sbjct: 1   MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 202 CGTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 381
           CG +E GKC+GHFGYIE P+ IYHPCHV+EL+++L+ VCLKCLR+K+ K++Q  G D  S
Sbjct: 61  CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120

Query: 382 NIPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRI 558
            + C +C D+P + + E KT DG   LELK+  R     G WNFLDKYG+ + G    R 
Sbjct: 121 ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 559 LLPCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702
           LLP E L IL K  E+T++KL+ +GY +Q GY+++ LPVPPNCL IPE
Sbjct: 181 LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPE 228