BLASTX nr result
ID: Coptis24_contig00027062
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027062 (755 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 277 2e-72 ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar... 271 1e-70 ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 261 1e-67 gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo... 258 1e-66 gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi... 258 1e-66 >ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera] Length = 1830 Score = 277 bits (708), Expect = 2e-72 Identities = 134/218 (61%), Positives = 159/218 (72%) Frame = +1 Query: 49 IVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCESCGTAEPGKC 228 I+D I+ IRF +AT E H QLTNPFLGLPLE GKCESCGTAEPG+C Sbjct: 8 ILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEPGQC 67 Query: 229 DGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSFCLD 408 +GHFGYIE PI IYHP HVSELKR+LS +CLKCL+++++K+ N G PC C D Sbjct: 68 EGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNN-GITEQLLAPC--CQD 124 Query: 409 IPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILLPCEVLEIL 588 PQ+ V EF+ T+G FLELK+ +RS P +GFW+FL +YGYRYG SRILLP EV+EIL Sbjct: 125 SPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVMEIL 184 Query: 589 NKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702 + EDTRKKL KGYF QDGYILQ LPVPPNCLS+P+ Sbjct: 185 RRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPD 222 >ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa] gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit [Populus trichocarpa] Length = 924 Score = 271 bits (692), Expect = 1e-70 Identities = 133/226 (58%), Positives = 162/226 (71%) Frame = +1 Query: 22 MDENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCES 201 MDEN+ I D IT IRF +AT E H QLTNPFLGLPLE GKCES Sbjct: 1 MDENSQ-SSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCES 59 Query: 202 CGTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 381 CGT+EPGKC+GHFG+I PI IYHP H+SELKR+LS +CLKCL+LKR KI+ + S+ + Sbjct: 60 CGTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQ--IKSNGVA 117 Query: 382 NIPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRIL 561 S C + QI + E K TDG FLELK+ +RS +G WNFL++YG+RYG+ +R L Sbjct: 118 ERLLSCCEECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPL 177 Query: 562 LPCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIP 699 LPCEV++IL + +TRKKLSGKGYF QDGYILQ+LPVPPNCLS+P Sbjct: 178 LPCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVP 223 >ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis] gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase, putative [Ricinus communis] Length = 991 Score = 261 bits (667), Expect = 1e-67 Identities = 124/226 (54%), Positives = 159/226 (70%) Frame = +1 Query: 25 DENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCESC 204 D+ N ++ + I+F +AT E H QLTNPFLGLPLE GKCESC Sbjct: 3 DKENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESC 62 Query: 205 GTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSN 384 GT+EPGKC+GHFGYIE PI IYHP HVSELKR+LS +CLKCL+LK KI+ + ++R Sbjct: 63 GTSEPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKIKSSGVAER--- 119 Query: 385 IPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILL 564 S C + QI + E KTTDG L+LK+ +R +GFWNFL++YG+RYG+ +R LL Sbjct: 120 -LFSCCEEAAQISIKEVKTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLL 178 Query: 565 PCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702 PCEVLE+L + +DTRKKL+ KGYF QDGYI++ +PVPPNCLS+P+ Sbjct: 179 PCEVLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPD 224 >gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group] Length = 2017 Score = 258 bits (658), Expect = 1e-66 Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 1/228 (0%) Frame = +1 Query: 22 MDENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCES 201 M+E+ P+ + I I+ S++T+DE HP QL NPFLGLPLE+GKCES Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60 Query: 202 CGTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 381 CG +E GKC+GHFGYIE P+ IYHPCHV+EL+++L+ VCLKCLR+K+ K++Q G D S Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120 Query: 382 NIPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRI 558 + C +C D+P + + E KT DG LELK+ R G WNFLDKYG+ + G R Sbjct: 121 ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180 Query: 559 LLPCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702 LLP E L IL K E+T++KL+ +GY +Q GY+++ LPVPPNCL IPE Sbjct: 181 LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPE 228 >gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group] Length = 1867 Score = 258 bits (658), Expect = 1e-66 Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 1/228 (0%) Frame = +1 Query: 22 MDENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXXHPGQLTNPFLGLPLESGKCES 201 M+E+ P+ + I I+ S++T+DE HP QL NPFLGLPLE+GKCES Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60 Query: 202 CGTAEPGKCDGHFGYIEFPIKIYHPCHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 381 CG +E GKC+GHFGYIE P+ IYHPCHV+EL+++L+ VCLKCLR+K+ K++Q G D S Sbjct: 61 CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120 Query: 382 NIPCSFCLDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRI 558 + C +C D+P + + E KT DG LELK+ R G WNFLDKYG+ + G R Sbjct: 121 ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180 Query: 559 LLPCEVLEILNKFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPE 702 LLP E L IL K E+T++KL+ +GY +Q GY+++ LPVPPNCL IPE Sbjct: 181 LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPE 228