BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027043
         (768 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316817.1| predicted protein [Populus trichocarpa] gi|2...   100   2e-23
ref|XP_002270114.1| PREDICTED: uncharacterized protein LOC100256...   100   6e-19
ref|XP_002522235.1| conserved hypothetical protein [Ricinus comm...    93   7e-17
ref|XP_002305062.1| predicted protein [Populus trichocarpa] gi|2...    86   7e-15
ref|NP_193609.2| Rho termination factor [Arabidopsis thaliana] g...    73   9e-14

>ref|XP_002316817.1| predicted protein [Populus trichocarpa] gi|222859882|gb|EEE97429.1|
           predicted protein [Populus trichocarpa]
          Length = 264

 Score =  100 bits (248), Expect(2) = 2e-23
 Identities = 56/106 (52%), Positives = 71/106 (66%)
 Frame = -1

Query: 408 NKASPKRRGVSKTKGKTGDISPTSDFKLTRPPSYFVKKSPIPRPSTLKGQAIEVVNEDSL 229
           NK   ++R VSK + KT       D KLTRPPS F KKSPIP PST +    E+ +E S 
Sbjct: 159 NKVLTQKRSVSKDQ-KTQAEHALEDVKLTRPPSNFTKKSPIPSPSTSRENTTELNSEASE 217

Query: 228 ASSVRNDPDSHKIEDMKLSELKELAKSRGMKGYSKLKKGELIALLK 91
             +  +  +  ++E MKL+ELKELAKSRG+KGYSKLKKGEL+ LL+
Sbjct: 218 GKASNHKLELPRVEKMKLTELKELAKSRGIKGYSKLKKGELLELLR 263



 Score = 35.4 bits (80), Expect(2) = 2e-23
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -2

Query: 563 ALFRRIQSSIAKDGSGGTKKRSFVNNKKMESAESA--ESVLDVLRQS 429
           ALFRRIQSSI+K  S  TKK+     K   S E++   S+L+VLR S
Sbjct: 104 ALFRRIQSSISKGESTATKKK-----KASRSNENSPTNSILEVLRHS 145


>ref|XP_002270114.1| PREDICTED: uncharacterized protein LOC100256599 [Vitis vinifera]
           gi|297740528|emb|CBI30710.3| unnamed protein product
           [Vitis vinifera]
          Length = 262

 Score = 99.8 bits (247), Expect = 6e-19
 Identities = 53/113 (46%), Positives = 76/113 (67%)
 Frame = -1

Query: 429 KESNKRENKASPKRRGVSKTKGKTGDISPTSDFKLTRPPSYFVKKSPIPRPSTLKGQAIE 250
           + S K   +   +RRGV K      D    +D K  RPPS FVK+SPIP P+  +G+A++
Sbjct: 151 RPSKKEGGQVLTQRRGVPKKDQGIPDKQYVADLKSARPPSNFVKRSPIPSPTNPRGKAVK 210

Query: 249 VVNEDSLASSVRNDPDSHKIEDMKLSELKELAKSRGMKGYSKLKKGELIALLK 91
           + NE S+ ++  N+    K+E+MK++ELKELAKSRG+KGYSK+KK EL+ LL+
Sbjct: 211 LKNEVSVRTTSFNELP--KVEEMKVTELKELAKSRGIKGYSKMKKSELVELLR 261


>ref|XP_002522235.1| conserved hypothetical protein [Ricinus communis]
           gi|223538488|gb|EEF40093.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 289

 Score = 92.8 bits (229), Expect = 7e-17
 Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
 Frame = -1

Query: 435 PVKESNKRENKASPKRRGVSKTKGKTGDISP--TSDFKLTRPPSYFVKKSPIPRPSTLKG 262
           PVK   + +++ S ++RGV K   K  + +    + F  TRPPS F+++SPI  PS  +G
Sbjct: 174 PVK--GREQDRVSMQKRGVPKEGPKLQNNAQHMAAKFNFTRPPSKFIRRSPISSPSFPRG 231

Query: 261 QAIEVVNEDSLASSVRNDPDSHKIEDMKLSELKELAKSRGMKGYSKLKKGELIALLK 91
              E+ N+ S ++      +  +IE+MKL ELKELAKSRG+KGYSKLKKGEL+ LL+
Sbjct: 232 SPTELNNDPSASTESDKVLELPQIEEMKLPELKELAKSRGIKGYSKLKKGELLELLR 288


>ref|XP_002305062.1| predicted protein [Populus trichocarpa] gi|222848026|gb|EEE85573.1|
           predicted protein [Populus trichocarpa]
          Length = 226

 Score = 86.3 bits (212), Expect = 7e-15
 Identities = 56/121 (46%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
 Frame = -1

Query: 447 RCSAPVKESNK-RENKASPK-RRGVSKTKGKTGDISPTSDFKLTRPPSYFVKKSPIPRPS 274
           R     K++N   E K  P  +R V K + K    +  +DFKLTRP S F KK  IP PS
Sbjct: 106 RSRKQAKDTNTVTEGKNVPTHKRSVPKVQ-KMQARNALADFKLTRPHSNFTKKFSIPSPS 164

Query: 273 TLKGQAIEVVNEDSLASSVRNDPDSHKIEDMKLSELKELAKSRGMKGYSKLKKGELIALL 94
           T   +  E+ +E S A +  +  +  ++E+MKL+ELKELAKSRG+KGYSKLKKGEL+  L
Sbjct: 165 TPGEKNAELNSEASEAKASGSISELPRVEEMKLTELKELAKSRGIKGYSKLKKGELLEFL 224

Query: 93  K 91
           +
Sbjct: 225 R 225


>ref|NP_193609.2| Rho termination factor [Arabidopsis thaliana]
           gi|332658683|gb|AEE84083.1| Rho termination factor
           [Arabidopsis thaliana]
          Length = 245

 Score = 73.2 bits (178), Expect(2) = 9e-14
 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
 Frame = -1

Query: 375 KTKGKTG--DISPTSDFKLTRPPSYFVKKSPIPRPSTLKGQAIEVVNED-SLASSVRNDP 205
           KT+G T   +  P    +L RPPS FVK++P+   ++     + V N D +L    + + 
Sbjct: 146 KTEGDTSVKEKPPKRQVELPRPPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEE 205

Query: 204 DSHKIEDMKLSELKELAKSRGMKGYSKLKKGELIALLK 91
            +  IE MKL+ELKE+AK+RG+KGYSKL+K EL+ L++
Sbjct: 206 KASLIETMKLAELKEVAKNRGIKGYSKLRKSELLELIR 243



 Score = 29.6 bits (65), Expect(2) = 9e-14
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -2

Query: 563 ALFRRIQSSIAKDGSGGTKKRSFVNNKKMESAESAESVLDVLRQSRNQ 420
           +L +RIQSSI+K  S G ++    +    E     +++LDVL +SR +
Sbjct: 100 SLLKRIQSSISKGESRGVEEEKNSDESSKEK-PLTKAILDVLEKSRKK 146