BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027030
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   120   2e-25
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    94   9e-18
ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A...    94   2e-17
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    93   2e-17
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    92   4e-17

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  120 bits (300), Expect = 2e-25
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
 Frame = -1

Query: 485 ESLCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKAD-NLWVDWVHKNLIKGRNFWHLKV 309
           + +C    EGGLGI+ + + N+ + +KHIW L   +D ++W  W+  NL++GRNFW +K 
Sbjct: 150 DQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKT 209

Query: 308 PNDCSWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGILKGKFPQAFLYSSRGH 129
           P +CSW+W  +LK R+ A     + IGDG  TS W D WHP   L   + + F+Y S   
Sbjct: 210 PQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMA 269

Query: 128 LNITVGEFIEQGKWCFP 78
            N  V   I+  +W  P
Sbjct: 270 KNAKVNVLIQNSEWKTP 286


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
 Frame = -1

Query: 479 LCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLKVPND 300
           +C   DEGGLG+R L + N  S +K IW++++ AD+LWV W+H  L+K  +FW ++    
Sbjct: 247 VCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVRENTS 306

Query: 299 C-SWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGIL 174
             SW W+ VLK R  A Q+   ++ +G +T FW D W   G L
Sbjct: 307 LGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRL 349


>ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 265

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 44/128 (34%), Positives = 72/128 (56%)
 Frame = -1

Query: 485 ESLCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLKVP 306
           + +C  +DEGGL IRD S  N AS +K +W L+ K+ +LWV WV   ++KGR+ W + V 
Sbjct: 133 DEVCLPFDEGGLVIRDRSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLWEIDVG 192

Query: 305 NDCSWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGILKGKFPQAFLYSSRGHL 126
              SW +R +L+ R         ++G+GK    WLDPW   G +  +F ++ +Y +    
Sbjct: 193 VGRSWCFRAILRKREILEAHVNIEVGNGKKCRVWLDPWIQGGPIIQQFGESVIYDAGSRW 252

Query: 125 NITVGEFI 102
           +  + +F+
Sbjct: 253 DARLVDFM 260


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
 Frame = -1

Query: 479  LCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLK-VPN 303
            +C   DEGGLG+R L + N    +K +WK+V+ +++LWV WV ++L++  +FW +K   +
Sbjct: 865  VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924

Query: 302  DCSWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGIL 174
              SW W+ +LK R  A  ++  ++G+GK TSFW D W   G L
Sbjct: 925  QGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQL 967


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
 Frame = -1

Query: 479  LCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLKVPND 300
            +C L +EGGLG++ L + N+ S +K IW++++  D+LWV WV+K+LI+   FW +K    
Sbjct: 1012 VCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTG 1071

Query: 299  C-SWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGIL 174
              SW WR +LK R +A      ++  G  TSFW D W P G L
Sbjct: 1072 LGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRL 1114