BLASTX nr result
ID: Coptis24_contig00027030
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00027030 (488 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 120 2e-25 dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 94 9e-18 ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A... 94 2e-17 dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 93 2e-17 gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 92 4e-17 >ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1| predicted protein [Populus trichocarpa] Length = 517 Score = 120 bits (300), Expect = 2e-25 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Frame = -1 Query: 485 ESLCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKAD-NLWVDWVHKNLIKGRNFWHLKV 309 + +C EGGLGI+ + + N+ + +KHIW L +D ++W W+ NL++GRNFW +K Sbjct: 150 DQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKT 209 Query: 308 PNDCSWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGILKGKFPQAFLYSSRGH 129 P +CSW+W +LK R+ A + IGDG TS W D WHP L + + F+Y S Sbjct: 210 PQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMA 269 Query: 128 LNITVGEFIEQGKWCFP 78 N V I+ +W P Sbjct: 270 KNAKVNVLIQNSEWKTP 286 >dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 489 Score = 94.4 bits (233), Expect = 9e-18 Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Frame = -1 Query: 479 LCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLKVPND 300 +C DEGGLG+R L + N S +K IW++++ AD+LWV W+H L+K +FW ++ Sbjct: 247 VCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVRENTS 306 Query: 299 C-SWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGIL 174 SW W+ VLK R A Q+ ++ +G +T FW D W G L Sbjct: 307 LGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRL 349 >ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis sativus] Length = 265 Score = 93.6 bits (231), Expect = 2e-17 Identities = 44/128 (34%), Positives = 72/128 (56%) Frame = -1 Query: 485 ESLCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLKVP 306 + +C +DEGGL IRD S N AS +K +W L+ K+ +LWV WV ++KGR+ W + V Sbjct: 133 DEVCLPFDEGGLVIRDRSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLWEIDVG 192 Query: 305 NDCSWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGILKGKFPQAFLYSSRGHL 126 SW +R +L+ R ++G+GK WLDPW G + +F ++ +Y + Sbjct: 193 VGRSWCFRAILRKREILEAHVNIEVGNGKKCRVWLDPWIQGGPIIQQFGESVIYDAGSRW 252 Query: 125 NITVGEFI 102 + + +F+ Sbjct: 253 DARLVDFM 260 >dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Score = 93.2 bits (230), Expect = 2e-17 Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Frame = -1 Query: 479 LCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLK-VPN 303 +C DEGGLG+R L + N +K +WK+V+ +++LWV WV ++L++ +FW +K + Sbjct: 865 VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924 Query: 302 DCSWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGIL 174 SW W+ +LK R A ++ ++G+GK TSFW D W G L Sbjct: 925 QGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQL 967 >gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1352 Score = 92.0 bits (227), Expect = 4e-17 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Frame = -1 Query: 479 LCYLYDEGGLGIRDLSKVNQASNMKHIWKLVTKADNLWVDWVHKNLIKGRNFWHLKVPND 300 +C L +EGGLG++ L + N+ S +K IW++++ D+LWV WV+K+LI+ FW +K Sbjct: 1012 VCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTG 1071 Query: 299 C-SWSWRNVLKGRTEAAQVAIHQIGDGKNTSFWLDPWHPSGIL 174 SW WR +LK R +A ++ G TSFW D W P G L Sbjct: 1072 LGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRL 1114