BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026929
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             118   6e-35
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   117   3e-34
emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]                  116   3e-33
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   112   4e-33
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             116   4e-33

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  118 bits (295), Expect(2) = 6e-35
 Identities = 56/95 (58%), Positives = 71/95 (74%)
 Frame = +1

Query: 151  GTYCYTRMSFGLKNAGATFQRLGEKMSESKIRRGMKIYIDDMVEKSMTEEEHLAGLSETF 330
            GTYCY  MSFGLKNAGAT+QR   KM   +I R +++YIDDM+ KS+  E+H+  LS+ F
Sbjct: 940  GTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCF 999

Query: 331  SILRRHKLMLNPEKCTFGVTSEKFLGYIVTYRGIE 435
             +L  + + LNP KCTFGVTS +FLGY+VT RGIE
Sbjct: 1000 DVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIE 1034



 Score = 54.3 bits (129), Expect(2) = 6e-35
 Identities = 23/50 (46%), Positives = 34/50 (68%)
 Frame = +3

Query: 3    DCYPMPRIDELVDKTAEFKVFSFMDTSMGYNQVVMYGPEQEKIAFIVEGG 152
            D YP+P ID LV+ T+   + SFMD   GYNQ++M+  +QEK +F+ + G
Sbjct: 891  DSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRG 940


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  117 bits (292), Expect(2) = 3e-34
 Identities = 54/95 (56%), Positives = 69/95 (72%)
 Frame = +1

Query: 151  GTYCYTRMSFGLKNAGATFQRLGEKMSESKIRRGMKIYIDDMVEKSMTEEEHLAGLSETF 330
            GTYCY  M FGLKNAGAT+ RL  +M   ++   M++YIDDM+ KS+  EEH+  L + F
Sbjct: 898  GTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCF 957

Query: 331  SILRRHKLMLNPEKCTFGVTSEKFLGYIVTYRGIE 435
             +L R+ + LNP KCTFGVTS +FLGY+VT RGIE
Sbjct: 958  QVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIE 992



 Score = 53.1 bits (126), Expect(2) = 3e-34
 Identities = 23/50 (46%), Positives = 34/50 (68%)
 Frame = +3

Query: 3   DCYPMPRIDELVDKTAEFKVFSFMDTSMGYNQVVMYGPEQEKIAFIVEGG 152
           D +P+P ID LV+ TA  ++ SFMD   GYNQ++M+  ++EK  FI + G
Sbjct: 849 DSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQG 898


>emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
          Length = 2097

 Score =  116 bits (291), Expect(2) = 3e-33
 Identities = 54/95 (56%), Positives = 70/95 (73%)
 Frame = +1

Query: 151  GTYCYTRMSFGLKNAGATFQRLGEKMSESKIRRGMKIYIDDMVEKSMTEEEHLAGLSETF 330
            GTYCY +M FGLKNAGATFQRL +K    +I R ++ Y+DD+V K+    +H+  L ETF
Sbjct: 1187 GTYCYIKMPFGLKNAGATFQRLMQKTFSPQIGRNLEAYVDDLVVKNTNAGDHIPDLQETF 1246

Query: 331  SILRRHKLMLNPEKCTFGVTSEKFLGYIVTYRGIE 435
            + LRRH L LNPEKC FGV++ K LG++V+ RGIE
Sbjct: 1247 NNLRRHNLKLNPEKCVFGVSAGKLLGFLVSARGIE 1281



 Score = 50.1 bits (118), Expect(2) = 3e-33
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +3

Query: 3    DCYPMPRIDELVDKTAEFKVFSFMDTSMGYNQVVMYGPEQEKIAFIVEGG 152
            D +P+PRID+LVD T+  ++ SF+D   GY+Q+ M   ++EK +FI   G
Sbjct: 1138 DDFPLPRIDQLVDSTSGCELLSFLDAYSGYHQISMCKEDEEKTSFITPYG 1187


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  112 bits (281), Expect(2) = 4e-33
 Identities = 53/95 (55%), Positives = 70/95 (73%)
 Frame = +1

Query: 151 GTYCYTRMSFGLKNAGATFQRLGEKMSESKIRRGMKIYIDDMVEKSMTEEEHLAGLSETF 330
           G YCY  M FGL+NAGAT+ RL  KM    + + M++YIDDM+ KS+ +E+H+  L E F
Sbjct: 580 GIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECF 639

Query: 331 SILRRHKLMLNPEKCTFGVTSEKFLGYIVTYRGIE 435
           +IL ++++ LNP KCTFGV S +FLGYIVT RGIE
Sbjct: 640 AILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIE 674



 Score = 53.5 bits (127), Expect(2) = 4e-33
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +3

Query: 3   DCYPMPRIDELVDKTAEFKVFSFMDTSMGYNQVVMYGPEQEKIAFIVEGG 152
           D +P+P ID LV+ TA  ++ SFMD   GYNQ++M   +QEK  FI + G
Sbjct: 531 DSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRG 580


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  116 bits (291), Expect(2) = 4e-33
 Identities = 55/95 (57%), Positives = 71/95 (74%)
 Frame = +1

Query: 151 GTYCYTRMSFGLKNAGATFQRLGEKMSESKIRRGMKIYIDDMVEKSMTEEEHLAGLSETF 330
           G YCY  M FGLKNAGAT+QRL  KM  + + + M++YIDDM+ KS+ +E+H+  L E F
Sbjct: 137 GIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECF 196

Query: 331 SILRRHKLMLNPEKCTFGVTSEKFLGYIVTYRGIE 435
            IL ++++ LNP KCTFGV S +FLGYIVT RGIE
Sbjct: 197 GILNKYQMKLNPAKCTFGVPSGEFLGYIVTERGIE 231



 Score = 49.7 bits (117), Expect(2) = 4e-33
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +3

Query: 3   DCYPMPRIDELVDKTAEFKVFSFMDTSMGYNQVVMYGPEQEKIAFIVEGG 152
           D +P+P ID LV+ TA  ++ +FMD   G NQ++M   +QEK +FI + G
Sbjct: 88  DSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMMNPEDQEKTSFITDRG 137