BLASTX nr result

ID: Coptis24_contig00026827 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026827
         (459 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284383.1| PREDICTED: oxysterol-binding protein-related...    73   3e-11
ref|XP_003544769.1| PREDICTED: oxysterol-binding protein-related...    72   4e-11
ref|XP_003544768.1| PREDICTED: oxysterol-binding protein-related...    72   4e-11
ref|XP_002301011.1| predicted protein [Populus trichocarpa] gi|2...    69   4e-10
ref|XP_002307418.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09

>ref|XP_002284383.1| PREDICTED: oxysterol-binding protein-related protein 1C [Vitis
           vinifera] gi|302141870|emb|CBI19073.3| unnamed protein
           product [Vitis vinifera]
          Length = 797

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 49/113 (43%), Positives = 59/113 (52%), Gaps = 32/113 (28%)
 Frame = -1

Query: 243 MHPFCCITTV-DHNS---FISMTE----------------SSTNTNPNALNNDHHVVVV- 127
           MHPFCCITTV D NS     S+ E                S +    N LN++H   +  
Sbjct: 1   MHPFCCITTVSDPNSGKPSHSLPEFHMSPLPPAVGGGGVRSDSGNRSNNLNHNHGNNITD 60

Query: 126 ---LSEGQD------GGGGVMKVNEIVG--ICGVLYKWVNYGKGWRPRWFVLQ 1
              L+E         G    +K+N+IVG  I G+LYKWVNYGKGWRPRWFVLQ
Sbjct: 61  HGRLTESMSRPPSICGDQREVKINDIVGNGISGILYKWVNYGKGWRPRWFVLQ 113


>ref|XP_003544769.1| PREDICTED: oxysterol-binding protein-related protein 1C-like
           isoform 2 [Glycine max]
          Length = 771

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
 Frame = -1

Query: 243 MHPFCCITTVDHNSFISMTE--SSTNTNPNALNNDHHVVVVLSEGQDGGGGVM------- 91
           MHPFCC++ V  NS  +M    ++     ++      + + LS G + G   +       
Sbjct: 1   MHPFCCVSAVSDNSSPAMPPLPAAAAARSDSAPRPSQLHLCLSNGGESGRTSLAPAPAVD 60

Query: 90  -KVNEIVG--ICGVLYKWVNYGKGWRPRWFVLQ 1
            ++N++VG  I G+L+KWVNYGKGWRPRWFVLQ
Sbjct: 61  VRINDLVGNGISGILHKWVNYGKGWRPRWFVLQ 93


>ref|XP_003544768.1| PREDICTED: oxysterol-binding protein-related protein 1C-like
           isoform 1 [Glycine max]
          Length = 781

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
 Frame = -1

Query: 243 MHPFCCITTVDHNSFISMTE--SSTNTNPNALNNDHHVVVVLSEGQDGGGGVM------- 91
           MHPFCC++ V  NS  +M    ++     ++      + + LS G + G   +       
Sbjct: 1   MHPFCCVSAVSDNSSPAMPPLPAAAAARSDSAPRPSQLHLCLSNGGESGRTSLAPAPAVD 60

Query: 90  -KVNEIVG--ICGVLYKWVNYGKGWRPRWFVLQ 1
            ++N++VG  I G+L+KWVNYGKGWRPRWFVLQ
Sbjct: 61  VRINDLVGNGISGILHKWVNYGKGWRPRWFVLQ 93


>ref|XP_002301011.1| predicted protein [Populus trichocarpa] gi|222842737|gb|EEE80284.1|
           predicted protein [Populus trichocarpa]
          Length = 809

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 46/125 (36%), Positives = 56/125 (44%), Gaps = 44/125 (35%)
 Frame = -1

Query: 243 MHPFCCITTVDHNSFISMTESST----------------------NTNPNALNNDHH--- 139
           MHP CCI+TV  +S  +++ + T                        N N  +N HH   
Sbjct: 1   MHPLCCISTVSDHSPANLSMAVTARSDPGSTTVHPQIQIQIQNHNQHNTNHFSNHHHHNH 60

Query: 138 ---VVVVLSEGQDGGGGV--------------MKVNEIVG--ICGVLYKWVNYGKGWRPR 16
                   S G DG                  +K+N+IVG  I GVLYKWVNYGKGWRPR
Sbjct: 61  STASNCSSSNGTDGNKSNRTSHQREQPLVQVDVKINDIVGNGISGVLYKWVNYGKGWRPR 120

Query: 15  WFVLQ 1
           WFVLQ
Sbjct: 121 WFVLQ 125


>ref|XP_002307418.1| predicted protein [Populus trichocarpa] gi|222856867|gb|EEE94414.1|
           predicted protein [Populus trichocarpa]
          Length = 357

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
 Frame = -1

Query: 324 RPQSSNIQHST*SHAPHTK*QNYSSVFMHPFCCITTVDHNSFISMTESSTNTNPNALNND 145
           +PQ+ N  H+  SH  +    N+S+                  S   S+  T+ N  N  
Sbjct: 36  QPQNQNQNHNNTSHFSNHHHHNHSTA-----------------SYCSSNNGTDCNKNNRM 78

Query: 144 HHVVVVLSEGQDGGGGVMKVNEIVG--ICGVLYKWVNYGKGWRPRWFVLQ 1
            H  V  +  Q      +K+N+IVG  I G+LYKWVNYGKGWRPRWFVLQ
Sbjct: 79  SHQRVSSAREQPLIQVDVKINDIVGNGISGILYKWVNYGKGWRPRWFVLQ 128


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