BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026813
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...    94   9e-18
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...    89   3e-16
ref|NP_179197.1| pentatricopeptide repeat-containing protein [Ar...    85   7e-15

>ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 46/72 (63%), Positives = 56/72 (77%)
 Frame = +1

Query: 127 QRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKHDLVSYST 306
           QRSKSRW ++ +L  PNGF   + S+I L IKNNP LALRFF W+Q  SLC H+L+SYST
Sbjct: 53  QRSKSRWRFLNSLC-PNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYST 111

Query: 307 IIHILARARLKT 342
           +IHILAR RL+T
Sbjct: 112 LIHILARGRLRT 123


>ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
           gi|449472579|ref|XP_004153637.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 46/72 (63%), Positives = 56/72 (77%)
 Frame = +1

Query: 127 QRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKHDLVSYST 306
           QRSKSRW ++ +L  PNGF   + S+I L IKNNP LALRFF W+Q  SLC H+L+SYST
Sbjct: 53  QRSKSRWRFLNSLC-PNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYST 111

Query: 307 IIHILARARLKT 342
           +IHILAR RL+T
Sbjct: 112 LIHILARGRLRT 123


>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Vitis vinifera]
          Length = 492

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 46/74 (62%), Positives = 56/74 (75%)
 Frame = +1

Query: 121 KEQRSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKHDLVSY 300
           + QRSKSRW+++++L  P GFT  + S+I L IKNNP LAL FF W    SLC H L+SY
Sbjct: 45  RHQRSKSRWSHLQSLF-PKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHTLLSY 103

Query: 301 STIIHILARARLKT 342
           STIIHILARARLK+
Sbjct: 104 STIIHILARARLKS 117


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Glycine max]
          Length = 487

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +1

Query: 130 RSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKHDLVSYSTI 309
           RSKSRW+ +++   PNG T  + SEITL IKN P+LALRFF W++  SLC H+L SYS+I
Sbjct: 46  RSKSRWSNLRSAC-PNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCNHNLASYSSI 104

Query: 310 IHILARARLKT 342
           IH+LARARL +
Sbjct: 105 IHLLARARLSS 115


>ref|NP_179197.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75267579|sp|Q9XIM8.1|PP155_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g15980 gi|5306237|gb|AAD41970.1| hypothetical protein
           [Arabidopsis thaliana] gi|330251359|gb|AEC06453.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 498

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 41/71 (57%), Positives = 57/71 (80%)
 Frame = +1

Query: 130 RSKSRWNYIKTLVNPNGFTSKQVSEITLGIKNNPRLALRFFHWSQKNSLCKHDLVSYSTI 309
           RSKSRW+ +++L  P+GFT  Q SEITL ++NNP L+LRFF ++++ SLC HD  S ST+
Sbjct: 53  RSKSRWSTLRSL-QPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSHDTHSCSTL 111

Query: 310 IHILARARLKT 342
           IHIL+R+RLK+
Sbjct: 112 IHILSRSRLKS 122