BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026802
         (676 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    89   6e-16
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    89   6e-16
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    87   4e-15
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    87   4e-15
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    75   2e-11

>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 3/179 (1%)
 Frame = -1

Query: 577 NRGAHDSQILKKWGLPDKLGRAPIFKDCKWYPPDGDVIKMNVDGASQGNPGPSGYGVVFR 398
           N    D ++ K + +P K+ R     D  W PP GD++K+N DG+S G       G+V R
Sbjct: 187 NSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIR 246

Query: 397 DSRCLFVAVVCRHIDFATYYIAECLAILEGVEYAVQRNWKKLWVESDSAAAVHAFGSS-Q 221
           DS   F+  +  +I  AT   AE  A +  +E A +     + +E+DS   V+AF     
Sbjct: 247 DSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLG 306

Query: 220 LPWGMKQRWDKCKEKLE--YCKITPTWRECNFSADKVAKYAADLQTKEQLVFDVKPPWI 50
           +PW M+ RW  C +  +   C      RE N  AD +AK+   L      ++   PP+I
Sbjct: 307 VPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFI 365


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 89.4 bits (220), Expect = 6e-16
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 3/179 (1%)
 Frame = -1

Query: 577 NRGAHDSQILKKWGLPDKLGRAPIFKDCKWYPPDGDVIKMNVDGASQGNPGPSGYGVVFR 398
           N    D ++ K + +P K+ R     D  W PP GD++K+N DG+S G       G+V R
Sbjct: 24  NSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIR 83

Query: 397 DSRCLFVAVVCRHIDFATYYIAECLAILEGVEYAVQRNWKKLWVESDSAAAVHAFGSS-Q 221
           DS   F+  +  +I  AT   AE  A +  +E A +     + +E+DS   V+AF     
Sbjct: 84  DSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLG 143

Query: 220 LPWGMKQRWDKCKEKLE--YCKITPTWRECNFSADKVAKYAADLQTKEQLVFDVKPPWI 50
           +PW M+ RW  C +  +   C      RE N  AD +AK+   L      ++   PP+I
Sbjct: 144 VPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFI 202


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 86.7 bits (213), Expect = 4e-15
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
 Frame = -1

Query: 562 DSQILKKWGLPDKLGRAPIFKDCKWYPPDGDVIKMNVDGASQGNPGPSGYGVVFRDSRCL 383
           D ++ + + +P K  R    ++  W PP G  +K+N DG+  G+P     GV+FR S+ +
Sbjct: 221 DFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTM 280

Query: 382 FVAVVCRHIDFATYYIAECLAILEGVEYAVQRNWKKLWVESDSAAAVHAFG-SSQLPWGM 206
           F     ++I +AT   AE  A +  +E A + +   +W+E+DS   + AF  ++ +PW M
Sbjct: 281 FCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKM 340

Query: 205 KQRWDKCKEKLEYCK-----ITPTWRECNFSADKVAK 110
             RW  C   L +C+      T   RE N  AD +AK
Sbjct: 341 HIRWHNC---LLFCRSIRSLCTHVNREGNLVADALAK 374


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 86.7 bits (213), Expect = 4e-15
 Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
 Frame = -1

Query: 490 WYPPDGDVIKMNVDGASQGNPGPSGYGVVFRDSRCLFVAVVCRHIDFATYYIAECLAILE 311
           WY  +   IK N DGAS      S  G VFRD    F++   +++   + Y  E  AI+ 
Sbjct: 225 WYNRNQRWIKFNTDGASTATS--SSCGGVFRDQNANFLSCFAKNLGGGSAYQPELAAIMR 282

Query: 310 GVEYAVQRNWKKLWVESDSAAAVHAFGS-SQLPWGMKQRWDKCKEKLEYCK----ITPTW 146
            VE A QRNW+ +W+ESDSA  V AF   S +P  ++ RW  C++ L  C+    IT  +
Sbjct: 283 VVEIAYQRNWRNIWIESDSALVVMAFKKMSMIPCRLRNRWINCRKLL--CRMNFVITHIY 340

Query: 145 RECNFSADKVAKYAADLQ 92
           RE N  ADK+A    D++
Sbjct: 341 REDNRCADKLASKGLDIE 358


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
 Frame = -1

Query: 466 IKMNVDGASQGNPGPSGYGVVFRDSRCLFVAVVCRHIDFATYYIAECLAILEGVEYAVQR 287
           +K+N+DG++ G P     G VFR+ +   +    ++I  AT + AE  A +  +E +++ 
Sbjct: 11  VKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEY 70

Query: 286 NWKKLWVESDSAAAVHAFGSSQ-LPWGMKQRWDKC---KEKLEYCKITPTWRECNFSADK 119
           N + +W+E+DS   V AF SS+ +PW ++ RW+ C    +K++ C  T   RE N  AD 
Sbjct: 71  NLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIK-CVCTHIHREGNAGADS 129

Query: 118 VAKYAADL 95
           +AK    L
Sbjct: 130 LAKNGKSL 137