BLASTX nr result
ID: Coptis24_contig00026801
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026801 (466 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_193845.2| U3-55K-like protein 2 [Arabidopsis thaliana] gi... 66 3e-09 dbj|BAK03709.1| predicted protein [Hordeum vulgare subsp. vulgare] 66 3e-09 ref|XP_002869905.1| EMB2271 [Arabidopsis lyrata subsp. lyrata] g... 65 8e-09 ref|XP_002306239.1| predicted protein [Populus trichocarpa] gi|2... 64 1e-08 ref|XP_002309903.1| predicted protein [Populus trichocarpa] gi|2... 64 1e-08 >ref|NP_193845.2| U3-55K-like protein 2 [Arabidopsis thaliana] gi|62910985|gb|AAY21208.1| U3-55K-like protein 2 [Arabidopsis thaliana] gi|332659006|gb|AEE84406.1| U3-55K-like protein 2 [Arabidopsis thaliana] Length = 479 Score = 66.2 bits (160), Expect = 3e-09 Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 1/56 (1%) Frame = -1 Query: 460 VRSLYDVPLDGYVNSLAFARSGRFLVAGVGQEPRL-TGTPLSAGSNGVFMHYLSLS 296 ++ LY++PL G+VNSLAFA+SGRFL+AGVGQEPRL L + NGV +H L LS Sbjct: 424 IQPLYELPLPGFVNSLAFAKSGRFLIAGVGQEPRLGRWGCLKSAQNGVAIHPLRLS 479 >dbj|BAK03709.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 521 Score = 66.2 bits (160), Expect = 3e-09 Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 1/57 (1%) Frame = -1 Query: 460 VRSLYDVPLDGYVNSLAFARSGRFLVAGVGQEPRL-TGTPLSAGSNGVFMHYLSLSD 293 ++ L+D+PLDG+VNSLA A+SGRF+VAGVG+EPRL ++ NGV +H LSL D Sbjct: 460 MQPLFDLPLDGFVNSLAIAKSGRFIVAGVGREPRLGKWGRVATAKNGVAIHRLSLQD 516 >ref|XP_002869905.1| EMB2271 [Arabidopsis lyrata subsp. lyrata] gi|297315741|gb|EFH46164.1| EMB2271 [Arabidopsis lyrata subsp. lyrata] Length = 468 Score = 64.7 bits (156), Expect = 8e-09 Identities = 33/56 (58%), Positives = 43/56 (76%), Gaps = 1/56 (1%) Frame = -1 Query: 460 VRSLYDVPLDGYVNSLAFARSGRFLVAGVGQEPRL-TGTPLSAGSNGVFMHYLSLS 296 ++ LY++PL G+VNSLAFA+SG+FL+AGVGQEPRL L + NGV +H L LS Sbjct: 413 IQPLYELPLPGFVNSLAFAKSGQFLIAGVGQEPRLGRWGCLKSAQNGVTIHPLRLS 468 >ref|XP_002306239.1| predicted protein [Populus trichocarpa] gi|222855688|gb|EEE93235.1| predicted protein [Populus trichocarpa] Length = 502 Score = 63.9 bits (154), Expect = 1e-08 Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Frame = -1 Query: 460 VRSLYDVPLDGYVNSLAFARSGRFLVAGVGQEPRL-TGTPLSAGSNGVFMHYLSL 299 +R LYD+PL G+VNSLAFA+SG+FL+AGVGQEPRL SA NGV + L L Sbjct: 447 IRPLYDLPLTGFVNSLAFAKSGKFLLAGVGQEPRLGRWGHNSAARNGVAIQQLKL 501 >ref|XP_002309903.1| predicted protein [Populus trichocarpa] gi|222852806|gb|EEE90353.1| predicted protein [Populus trichocarpa] Length = 500 Score = 63.9 bits (154), Expect = 1e-08 Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Frame = -1 Query: 460 VRSLYDVPLDGYVNSLAFARSGRFLVAGVGQEPRL-TGTPLSAGSNGVFMHYLSL 299 +R LYD+PL G+VNSLAFA+SG+FLVAGVGQEPRL SA NGV + L L Sbjct: 446 IRPLYDLPLIGFVNSLAFAKSGKFLVAGVGQEPRLGRWGHNSAARNGVAIQRLKL 500