BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026791
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containi...   230   8e-59
ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|2...   208   4e-52
ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containi...   206   1e-51
ref|XP_003610734.1| Pentatricopeptide repeat-containing protein ...   202   2e-50
ref|NP_193218.1| pentatricopeptide repeat-containing protein [Ar...   191   5e-47

>ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera] gi|297737070|emb|CBI26271.3| unnamed
           protein product [Vitis vinifera]
          Length = 727

 Score =  230 bits (587), Expect = 8e-59
 Identities = 106/134 (79%), Positives = 124/134 (92%)
 Frame = +1

Query: 4   PNVVVWGSLLSACRVHGDVELGELAAKRLLELDPEHDGAHVLLSNIYAKARRWEDVGEVR 183
           PNV++WGSL++ACRVHG++ELGE AAKRLLELDP+HDGAHV LSNIYAKARRWEDVG+VR
Sbjct: 522 PNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVR 581

Query: 184 KFMKNRGIAKERGCSRIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKLVGYAPNTS 363
           K MK++GI+KERGCSR E N EIHEFL++D++HK  DEIYEKL EVVSKLKLVGY+PNT 
Sbjct: 582 KLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTC 641

Query: 364 SVLVDLDEEEKKEV 405
           S+LVDL+EEEKKEV
Sbjct: 642 SILVDLEEEEKKEV 655


>ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|222864804|gb|EEF01935.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score =  208 bits (529), Expect = 4e-52
 Identities = 96/134 (71%), Positives = 118/134 (88%)
 Frame = +1

Query: 4   PNVVVWGSLLSACRVHGDVELGELAAKRLLELDPEHDGAHVLLSNIYAKARRWEDVGEVR 183
           PNVV+WGSL++AC++HG+ ELGE AAK++LEL+P+HDGA V LSNIYAK RRW+DVGE+R
Sbjct: 247 PNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELR 306

Query: 184 KFMKNRGIAKERGCSRIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKLVGYAPNTS 363
             MK RGI+KERGCSRIE N +++EF+M+DK HKQ D+IYEKLDEVV +LKLVGY PNT 
Sbjct: 307 NLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTR 366

Query: 364 SVLVDLDEEEKKEV 405
           SVLVD++EE KKEV
Sbjct: 367 SVLVDVEEEGKKEV 380


>ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  206 bits (525), Expect = 1e-51
 Identities = 93/134 (69%), Positives = 119/134 (88%)
 Frame = +1

Query: 4   PNVVVWGSLLSACRVHGDVELGELAAKRLLELDPEHDGAHVLLSNIYAKARRWEDVGEVR 183
           PNV++WGSL+SAC+ HG++ELGE AA RLLEL+P+HDGA V+LSNIYAK +RW+DVG VR
Sbjct: 516 PNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVR 575

Query: 184 KFMKNRGIAKERGCSRIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKLVGYAPNTS 363
           K MK++G++KE+ CSRIE N E+H F+M+D+ HKQ+DEIY+KLD VVS+LKLVGY P+TS
Sbjct: 576 KLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTS 635

Query: 364 SVLVDLDEEEKKEV 405
            +LVDL+EEEKKEV
Sbjct: 636 GILVDLEEEEKKEV 649


>ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512069|gb|AES93692.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  202 bits (515), Expect = 2e-50
 Identities = 92/134 (68%), Positives = 117/134 (87%)
 Frame = +1

Query: 4   PNVVVWGSLLSACRVHGDVELGELAAKRLLELDPEHDGAHVLLSNIYAKARRWEDVGEVR 183
           PNV++WGSL+SAC+VHG+ ELGE AAKRLLEL+P+HDGA V+LSNIYAK +RW DVG +R
Sbjct: 521 PNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIR 580

Query: 184 KFMKNRGIAKERGCSRIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKLVGYAPNTS 363
           K M  +GI+KE+  SRIE N ++H F+M+D+ HKQ+DEIYEKLDEVVSKLKLVGY P+TS
Sbjct: 581 KSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTS 640

Query: 364 SVLVDLDEEEKKEV 405
            +L+DL+EE+KKE+
Sbjct: 641 GILIDLEEEDKKEL 654


>ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274931|sp|O23337.1|PP311_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14820 gi|2244839|emb|CAB10261.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|7268228|emb|CAB78524.1| hypothetical protein
           [Arabidopsis thaliana] gi|332658106|gb|AEE83506.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 722

 Score =  191 bits (485), Expect = 5e-47
 Identities = 86/133 (64%), Positives = 114/133 (85%)
 Frame = +1

Query: 7   NVVVWGSLLSACRVHGDVELGELAAKRLLELDPEHDGAHVLLSNIYAKARRWEDVGEVRK 186
           NVV+WGSL+SACR+HG++ELG+ AAKR+LEL+P+HDGA VL+SNIYA+ +RWEDV  +R+
Sbjct: 512 NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRR 571

Query: 187 FMKNRGIAKERGCSRIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKLVGYAPNTSS 366
            M+ + + KE+G SRI+ NG+ HEFL+ DK HKQ++EIY KLDEVVSKLKL GY P+  S
Sbjct: 572 VMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGS 631

Query: 367 VLVDLDEEEKKEV 405
           VLVD++EEEKK++
Sbjct: 632 VLVDVEEEEKKDL 644