BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026729
         (1123 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containi...   428   e-132
ref|XP_002515341.1| pentatricopeptide repeat-containing protein,...   397   e-123
emb|CBI20759.3| unnamed protein product [Vitis vinifera]              389   e-121
emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera]   386   e-120
ref|XP_003549200.1| PREDICTED: pentatricopeptide repeat-containi...   366   e-112

>ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like
            [Vitis vinifera]
          Length = 609

 Score =  428 bits (1101), Expect(2) = e-132
 Identities = 214/318 (67%), Positives = 257/318 (80%), Gaps = 1/318 (0%)
 Frame = +2

Query: 173  KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352
            K  AQK     L PDA+TYTTLLKGF  A D +SVQK+V+EMKSS NL +DR AYTAIVD
Sbjct: 262  KENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVD 321

Query: 353  ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532
            ALL CGS+KGALC+FGEI+K  G +  LRPKPHLY+SMM   A +GDY++VK  H RM P
Sbjct: 322  ALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRP 381

Query: 533  DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712
            D++GTISPA+Q+EAD+LLMEAA+NDGQVD A   LSN+ T+W+ I W SRG M AVR+EA
Sbjct: 382  DSAGTISPAVQIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEA 441

Query: 713  LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889
            L GF+ +MFSPYLLPQV    PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDD
Sbjct: 442  LLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDD 501

Query: 890  WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069
            WGSCVGL+HREDC++L   +S +MR PPPCVT +TSIGRV DL+LEKRYKM+VVVK +NL
Sbjct: 502  WGSCVGLLHREDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNL 561

Query: 1070 YEIGYISSLRAVGVFTPE 1123
            Y   Y SSLRAVGVFT E
Sbjct: 562  YGSSYSSSLRAVGVFTSE 579



 Score = 72.8 bits (177), Expect(2) = e-132
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +3

Query: 9   GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155
           G P  A +V DEIL+QGLKPDRLTYNTL+FACVK+ ++D AM+ F EMK
Sbjct: 214 GFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMK 262


>ref|XP_002515341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545285|gb|EEF46790.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 600

 Score =  397 bits (1021), Expect(2) = e-123
 Identities = 199/318 (62%), Positives = 244/318 (76%), Gaps = 1/318 (0%)
 Frame = +2

Query: 173  KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352
            K EA++     L PD VTYTTLLKGF +A D  SV+ +V+EMK   NL IDR  +TA+VD
Sbjct: 255  KDEARQTNNVNLYPDVVTYTTLLKGFGNAKDLGSVKMIVLEMKLYHNLFIDRTGFTAMVD 314

Query: 353  ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532
            ALL  GS KGALCIFGEI+K  GV+P LRPKPHLYLSMMR FA++GDY MVK  H R+WP
Sbjct: 315  ALLNSGSIKGALCIFGEIIKRAGVNPDLRPKPHLYLSMMRAFAVQGDYSMVKNLHKRLWP 374

Query: 533  DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712
            D++GTISPA+Q EAD LLMEAA+N GQVD A E L  +  +W  ISWT+RG M AVR+EA
Sbjct: 375  DSTGTISPAIQQEADHLLMEAALNGGQVDAALENLRKIIPRWNGISWTNRGGMVAVRIEA 434

Query: 713  LSGF-STMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889
            L GF  ++FSPYLLPQ+    PI+ IM P +EAQPL   + L+KVVMRFFRD VVP++DD
Sbjct: 435  LLGFRKSIFSPYLLPQISSSEPIETIMTPLEEAQPLLGTLELKKVVMRFFRDEVVPIMDD 494

Query: 890  WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069
            WG+C+GL+HREDC +L  +L+ +MR PPPCVT  TSIG V+DL+L+K+Y+M+VV+K +NL
Sbjct: 495  WGNCIGLLHREDCTELNATLATMMRSPPPCVTTMTSIGHVVDLILDKKYRMVVVIKYSNL 554

Query: 1070 YEIGYISSLRAVGVFTPE 1123
              I Y SS RAVGVFT E
Sbjct: 555  DSITY-SSSRAVGVFTAE 571



 Score = 70.5 bits (171), Expect(2) = e-123
 Identities = 33/49 (67%), Positives = 39/49 (79%)
 Frame = +3

Query: 9   GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155
           G PQ A A+R+EIL+ GL PDRLTYNTL+ ACVKS+ +DAAM  F EMK
Sbjct: 207 GCPQAAVAMRNEILQLGLTPDRLTYNTLILACVKSKSLDAAMSFFEEMK 255


>emb|CBI20759.3| unnamed protein product [Vitis vinifera]
          Length = 570

 Score =  389 bits (998), Expect(2) = e-121
 Identities = 192/288 (66%), Positives = 233/288 (80%), Gaps = 1/288 (0%)
 Frame = +2

Query: 173  KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352
            K  AQK     L PDA+TYTTLLKGF  A D +SVQK+V+EMKSS NL +DR AYTAIVD
Sbjct: 279  KENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVD 338

Query: 353  ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532
            ALL CGS+KGALC+FGEI+K  G +  LRPKPHLY+SMM   A +GDY++VK  H RM P
Sbjct: 339  ALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRP 398

Query: 533  DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712
            D++GTISPA+Q+EAD+LLMEAA+NDGQVD A   LSN+ T+W+ I W SRG M AVR+EA
Sbjct: 399  DSAGTISPAVQIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEA 458

Query: 713  LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889
            L GF+ +MFSPYLLPQV    PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDD
Sbjct: 459  LLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDD 518

Query: 890  WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKR 1033
            WGSCVGL+HREDC++L   +S +MR PPPCVT +TSIGRV DL+LEKR
Sbjct: 519  WGSCVGLLHREDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKR 566



 Score = 72.8 bits (177), Expect(2) = e-121
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +3

Query: 9   GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155
           G P  A +V DEIL+QGLKPDRLTYNTL+FACVK+ ++D AM+ F EMK
Sbjct: 231 GFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMK 279


>emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera]
          Length = 1120

 Score =  386 bits (992), Expect(2) = e-120
 Identities = 201/318 (63%), Positives = 240/318 (75%), Gaps = 1/318 (0%)
 Frame = +2

Query: 173  KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352
            K  AQK     L PDA+TYTTLLKGF  A D +SVQK+V+EMKSS NL +DR AYTAIVD
Sbjct: 262  KENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVD 321

Query: 353  ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532
            ALL CGS+KGALCIFGEI+K  G +  LRPKPHLY+SMM   A +GDY++VK  H RM P
Sbjct: 322  ALLNCGSSKGALCIFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRP 381

Query: 533  DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712
            D++GTISPA+Q+EAD+LLMEAA+NDGQV                          AVR+EA
Sbjct: 382  DSAGTISPAVQIEADQLLMEAALNDGQV--------------------------AVRLEA 415

Query: 713  LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889
            L GF+ +MFSPYLLPQV    PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDD
Sbjct: 416  LLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDD 475

Query: 890  WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069
            WGSCVGL+H EDC++L   +S +MR PPPCVT +TSIGRV DL+LEKRYKM+VVVK +NL
Sbjct: 476  WGSCVGLLHHEDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNL 535

Query: 1070 YEIGYISSLRAVGVFTPE 1123
            Y   Y SSLRAVGVFT E
Sbjct: 536  YGSSYSSSLRAVGVFTSE 553



 Score = 72.8 bits (177), Expect(2) = e-120
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +3

Query: 9   GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155
           G P  A +V DEIL+QGLKPDRLTYNTL+FACVK+ ++D AM+ F EMK
Sbjct: 214 GFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMK 262


>ref|XP_003549200.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like
            [Glycine max]
          Length = 558

 Score =  366 bits (940), Expect(2) = e-112
 Identities = 187/318 (58%), Positives = 227/318 (71%), Gaps = 1/318 (0%)
 Frame = +2

Query: 173  KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352
            K EAQK     L PD VTYTT+LKGF    D  SV K+V+EMKS   L IDR AYT IVD
Sbjct: 220  KGEAQKFVNDDLFPDIVTYTTMLKGFGRMKDLASVLKIVLEMKSCRELYIDRTAYTEIVD 279

Query: 353  ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532
              L CGS KGALCIFGEILK  G++P LRPKPHLYLSMMR FA  GDY +VK  H R+WP
Sbjct: 280  VFLKCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKKLHKRIWP 339

Query: 533  DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712
            D++GTI    Q EAD LLMEAA+N GQV+VA + L+ + ++W+ ISWTSRG M A  +EA
Sbjct: 340  DSAGTILLVAQEEADHLLMEAALNAGQVNVAIKTLTEIVSRWKGISWTSRGGMVAYCIEA 399

Query: 713  LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889
            + GFS ++FSP+LLPQV    P++N M+ F+  +PL   + L KVVMRFF +AVVP++D+
Sbjct: 400  MLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATRPLQGTIKLRKVVMRFFHEAVVPIVDE 459

Query: 890  WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069
            W SC GL HREDC QL   L+ +MR PPP VT STS+G V+DL+LEKRY M++VV   N 
Sbjct: 460  WESCTGLFHREDCNQLDAPLTTMMRSPPPIVTTSTSVGYVVDLILEKRYPMVIVVNYRNS 519

Query: 1070 YEIGYISSLRAVGVFTPE 1123
            Y     SS RAVGVFT +
Sbjct: 520  YATTQYSS-RAVGVFTSD 536



 Score = 67.4 bits (163), Expect(2) = e-112
 Identities = 31/49 (63%), Positives = 38/49 (77%)
 Frame = +3

Query: 9   GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155
           G P  A  + +EILRQG+ PDRLTYNTL+ ACV+S ++DAAMQ F EMK
Sbjct: 172 GCPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDAAMQFFGEMK 220