BLASTX nr result
ID: Coptis24_contig00026729
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026729 (1123 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containi... 428 e-132 ref|XP_002515341.1| pentatricopeptide repeat-containing protein,... 397 e-123 emb|CBI20759.3| unnamed protein product [Vitis vinifera] 389 e-121 emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera] 386 e-120 ref|XP_003549200.1| PREDICTED: pentatricopeptide repeat-containi... 366 e-112 >ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like [Vitis vinifera] Length = 609 Score = 428 bits (1101), Expect(2) = e-132 Identities = 214/318 (67%), Positives = 257/318 (80%), Gaps = 1/318 (0%) Frame = +2 Query: 173 KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352 K AQK L PDA+TYTTLLKGF A D +SVQK+V+EMKSS NL +DR AYTAIVD Sbjct: 262 KENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVD 321 Query: 353 ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532 ALL CGS+KGALC+FGEI+K G + LRPKPHLY+SMM A +GDY++VK H RM P Sbjct: 322 ALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRP 381 Query: 533 DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712 D++GTISPA+Q+EAD+LLMEAA+NDGQVD A LSN+ T+W+ I W SRG M AVR+EA Sbjct: 382 DSAGTISPAVQIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEA 441 Query: 713 LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889 L GF+ +MFSPYLLPQV PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDD Sbjct: 442 LLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDD 501 Query: 890 WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069 WGSCVGL+HREDC++L +S +MR PPPCVT +TSIGRV DL+LEKRYKM+VVVK +NL Sbjct: 502 WGSCVGLLHREDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNL 561 Query: 1070 YEIGYISSLRAVGVFTPE 1123 Y Y SSLRAVGVFT E Sbjct: 562 YGSSYSSSLRAVGVFTSE 579 Score = 72.8 bits (177), Expect(2) = e-132 Identities = 33/49 (67%), Positives = 40/49 (81%) Frame = +3 Query: 9 GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155 G P A +V DEIL+QGLKPDRLTYNTL+FACVK+ ++D AM+ F EMK Sbjct: 214 GFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMK 262 >ref|XP_002515341.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545285|gb|EEF46790.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 600 Score = 397 bits (1021), Expect(2) = e-123 Identities = 199/318 (62%), Positives = 244/318 (76%), Gaps = 1/318 (0%) Frame = +2 Query: 173 KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352 K EA++ L PD VTYTTLLKGF +A D SV+ +V+EMK NL IDR +TA+VD Sbjct: 255 KDEARQTNNVNLYPDVVTYTTLLKGFGNAKDLGSVKMIVLEMKLYHNLFIDRTGFTAMVD 314 Query: 353 ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532 ALL GS KGALCIFGEI+K GV+P LRPKPHLYLSMMR FA++GDY MVK H R+WP Sbjct: 315 ALLNSGSIKGALCIFGEIIKRAGVNPDLRPKPHLYLSMMRAFAVQGDYSMVKNLHKRLWP 374 Query: 533 DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712 D++GTISPA+Q EAD LLMEAA+N GQVD A E L + +W ISWT+RG M AVR+EA Sbjct: 375 DSTGTISPAIQQEADHLLMEAALNGGQVDAALENLRKIIPRWNGISWTNRGGMVAVRIEA 434 Query: 713 LSGF-STMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889 L GF ++FSPYLLPQ+ PI+ IM P +EAQPL + L+KVVMRFFRD VVP++DD Sbjct: 435 LLGFRKSIFSPYLLPQISSSEPIETIMTPLEEAQPLLGTLELKKVVMRFFRDEVVPIMDD 494 Query: 890 WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069 WG+C+GL+HREDC +L +L+ +MR PPPCVT TSIG V+DL+L+K+Y+M+VV+K +NL Sbjct: 495 WGNCIGLLHREDCTELNATLATMMRSPPPCVTTMTSIGHVVDLILDKKYRMVVVIKYSNL 554 Query: 1070 YEIGYISSLRAVGVFTPE 1123 I Y SS RAVGVFT E Sbjct: 555 DSITY-SSSRAVGVFTAE 571 Score = 70.5 bits (171), Expect(2) = e-123 Identities = 33/49 (67%), Positives = 39/49 (79%) Frame = +3 Query: 9 GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155 G PQ A A+R+EIL+ GL PDRLTYNTL+ ACVKS+ +DAAM F EMK Sbjct: 207 GCPQAAVAMRNEILQLGLTPDRLTYNTLILACVKSKSLDAAMSFFEEMK 255 >emb|CBI20759.3| unnamed protein product [Vitis vinifera] Length = 570 Score = 389 bits (998), Expect(2) = e-121 Identities = 192/288 (66%), Positives = 233/288 (80%), Gaps = 1/288 (0%) Frame = +2 Query: 173 KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352 K AQK L PDA+TYTTLLKGF A D +SVQK+V+EMKSS NL +DR AYTAIVD Sbjct: 279 KENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVD 338 Query: 353 ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532 ALL CGS+KGALC+FGEI+K G + LRPKPHLY+SMM A +GDY++VK H RM P Sbjct: 339 ALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRP 398 Query: 533 DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712 D++GTISPA+Q+EAD+LLMEAA+NDGQVD A LSN+ T+W+ I W SRG M AVR+EA Sbjct: 399 DSAGTISPAVQIEADQLLMEAALNDGQVDAATHHLSNIITRWKGICWRSRGGMVAVRLEA 458 Query: 713 LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889 L GF+ +MFSPYLLPQV PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDD Sbjct: 459 LLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDD 518 Query: 890 WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKR 1033 WGSCVGL+HREDC++L +S +MR PPPCVT +TSIGRV DL+LEKR Sbjct: 519 WGSCVGLLHREDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKR 566 Score = 72.8 bits (177), Expect(2) = e-121 Identities = 33/49 (67%), Positives = 40/49 (81%) Frame = +3 Query: 9 GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155 G P A +V DEIL+QGLKPDRLTYNTL+FACVK+ ++D AM+ F EMK Sbjct: 231 GFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMK 279 >emb|CAN81324.1| hypothetical protein VITISV_041843 [Vitis vinifera] Length = 1120 Score = 386 bits (992), Expect(2) = e-120 Identities = 201/318 (63%), Positives = 240/318 (75%), Gaps = 1/318 (0%) Frame = +2 Query: 173 KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352 K AQK L PDA+TYTTLLKGF A D +SVQK+V+EMKSS NL +DR AYTAIVD Sbjct: 262 KENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLSVQKIVMEMKSSNNLFVDRTAYTAIVD 321 Query: 353 ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532 ALL CGS+KGALCIFGEI+K G + LRPKPHLY+SMM A +GDY++VK H RM P Sbjct: 322 ALLNCGSSKGALCIFGEIIKRAGQNFNLRPKPHLYISMMSALAARGDYNLVKSLHKRMRP 381 Query: 533 DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712 D++GTISPA+Q+EAD+LLMEAA+NDGQV AVR+EA Sbjct: 382 DSAGTISPAVQIEADQLLMEAALNDGQV--------------------------AVRLEA 415 Query: 713 LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889 L GF+ +MFSPYLLPQV PI+NIMMPF+EA+PL A + L++VVMRF++D+VVPVIDD Sbjct: 416 LLGFTRSMFSPYLLPQVSPADPIENIMMPFEEARPLLATLDLKRVVMRFYKDSVVPVIDD 475 Query: 890 WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069 WGSCVGL+H EDC++L +S +MR PPPCVT +TSIGRV DL+LEKRYKM+VVVK +NL Sbjct: 476 WGSCVGLLHHEDCRELDAPVSTMMRSPPPCVTTTTSIGRVADLILEKRYKMVVVVKYSNL 535 Query: 1070 YEIGYISSLRAVGVFTPE 1123 Y Y SSLRAVGVFT E Sbjct: 536 YGSSYSSSLRAVGVFTSE 553 Score = 72.8 bits (177), Expect(2) = e-120 Identities = 33/49 (67%), Positives = 40/49 (81%) Frame = +3 Query: 9 GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155 G P A +V DEIL+QGLKPDRLTYNTL+FACVK+ ++D AM+ F EMK Sbjct: 214 GFPMAALSVHDEILQQGLKPDRLTYNTLIFACVKTEKLDTAMRYFEEMK 262 >ref|XP_003549200.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like [Glycine max] Length = 558 Score = 366 bits (940), Expect(2) = e-112 Identities = 187/318 (58%), Positives = 227/318 (71%), Gaps = 1/318 (0%) Frame = +2 Query: 173 KIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFISVQKLVIEMKSSENLIIDRIAYTAIVD 352 K EAQK L PD VTYTT+LKGF D SV K+V+EMKS L IDR AYT IVD Sbjct: 220 KGEAQKFVNDDLFPDIVTYTTMLKGFGRMKDLASVLKIVLEMKSCRELYIDRTAYTEIVD 279 Query: 353 ALLICGSTKGALCIFGEILKLTGVHPYLRPKPHLYLSMMRTFALKGDYHMVKCFHARMWP 532 L CGS KGALCIFGEILK G++P LRPKPHLYLSMMR FA GDY +VK H R+WP Sbjct: 280 VFLKCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKKLHKRIWP 339 Query: 533 DTSGTISPALQVEADELLMEAAINDGQVDVAREVLSNVNTKWEEISWTSRGSMAAVRVEA 712 D++GTI Q EAD LLMEAA+N GQV+VA + L+ + ++W+ ISWTSRG M A +EA Sbjct: 340 DSAGTILLVAQEEADHLLMEAALNAGQVNVAIKTLTEIVSRWKGISWTSRGGMVAYCIEA 399 Query: 713 LSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQPLHANMYLEKVVMRFFRDAVVPVIDD 889 + GFS ++FSP+LLPQV P++N M+ F+ +PL + L KVVMRFF +AVVP++D+ Sbjct: 400 MLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATRPLQGTIKLRKVVMRFFHEAVVPIVDE 459 Query: 890 WGSCVGLVHREDCKQLKTSLSKIMRGPPPCVTASTSIGRVIDLLLEKRYKMIVVVKPNNL 1069 W SC GL HREDC QL L+ +MR PPP VT STS+G V+DL+LEKRY M++VV N Sbjct: 460 WESCTGLFHREDCNQLDAPLTTMMRSPPPIVTTSTSVGYVVDLILEKRYPMVIVVNYRNS 519 Query: 1070 YEIGYISSLRAVGVFTPE 1123 Y SS RAVGVFT + Sbjct: 520 YATTQYSS-RAVGVFTSD 536 Score = 67.4 bits (163), Expect(2) = e-112 Identities = 31/49 (63%), Positives = 38/49 (77%) Frame = +3 Query: 9 GSPQDAFAVRDEILRQGLKPDRLTYNTLVFACVKSRQMDAAMQLFAEMK 155 G P A + +EILRQG+ PDRLTYNTL+ ACV+S ++DAAMQ F EMK Sbjct: 172 GCPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDAAMQFFGEMK 220