BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026716
         (387 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281624.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymera...   100   2e-19
emb|CBI20904.3| unnamed protein product [Vitis vinifera]              100   2e-19
ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus comm...    70   2e-10
ref|XP_003588560.1| DNA polymerase I family protein expressed [M...    60   2e-07
gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japo...    57   2e-06

>ref|XP_002281624.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitis
            vinifera]
          Length = 2181

 Score =  100 bits (248), Expect = 2e-19
 Identities = 59/116 (50%), Positives = 74/116 (63%)
 Frame = +2

Query: 2    RIVLDKAEEARVAAFSAFKSLGLEVPLFSRPLLSMITDNPVAPGAWASSGEGSTSNFVGT 181
            +IVLDKAEEAR+AAFSAFKSLGL VP FSRPLL +  DNP    A  SSGEG+TS+FVGT
Sbjct: 1300 KIVLDKAEEARIAAFSAFKSLGLNVPQFSRPLLLIANDNPSQEAASTSSGEGATSSFVGT 1359

Query: 182  EFKEFPAKPDAEDRKMDADNAAPQPEAKLKKVQEYGLEPSRELESVTALRCTSGAE 349
            E  +   KP  E  +     A+     KLK + +  L  + E++S   ++C  GAE
Sbjct: 1360 ECMK-SGKPAVEGSENSNKVASEIGVEKLKNMSDVILGTAGEVKSTGPIQCKFGAE 1414


>emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  100 bits (248), Expect = 2e-19
 Identities = 59/116 (50%), Positives = 74/116 (63%)
 Frame = +2

Query: 2    RIVLDKAEEARVAAFSAFKSLGLEVPLFSRPLLSMITDNPVAPGAWASSGEGSTSNFVGT 181
            +IVLDKAEEAR+AAFSAFKSLGL VP FSRPLL +  DNP    A  SSGEG+TS+FVGT
Sbjct: 1232 KIVLDKAEEARIAAFSAFKSLGLNVPQFSRPLLLIANDNPSQEAASTSSGEGATSSFVGT 1291

Query: 182  EFKEFPAKPDAEDRKMDADNAAPQPEAKLKKVQEYGLEPSRELESVTALRCTSGAE 349
            E  +   KP  E  +     A+     KLK + +  L  + E++S   ++C  GAE
Sbjct: 1292 ECMK-SGKPAVEGSENSNKVASEIGVEKLKNMSDVILGTAGEVKSTGPIQCKFGAE 1346


>ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
            gi|223544402|gb|EEF45923.1| DNA polymerase theta,
            putative [Ricinus communis]
          Length = 2154

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 51/122 (41%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
 Frame = +2

Query: 2    RIVLDKAEEARVAAFSAFKSLGLEVPLFSRPLL-SMITDNPVAPGAWASSGEGSTSNFVG 178
            +IVL+KAEEARVAAFSAFKSLGL++P FSRPLL +   DN     A   S +G+T+  V 
Sbjct: 1280 KIVLEKAEEARVAAFSAFKSLGLDIPQFSRPLLMNTSVDNAEKHAASNLSEDGTTNVIVS 1339

Query: 179  TEFKEFPAKP-DAEDRKMDADNAAPQPEAKLKKVQEYGLEPSRELESVTALRCTSGAEKL 355
             E  +  +     E  K  A+        KL K  +  LE S E  S   ++   GAE  
Sbjct: 1340 LEQTDHTSYDLCIEGSKKPAEVTLESEGDKLIKTIDVVLEASAETNSTGLVQSNIGAENS 1399

Query: 356  EV 361
            +V
Sbjct: 1400 KV 1401


>ref|XP_003588560.1| DNA polymerase I family protein expressed [Medicago truncatula]
            gi|355477608|gb|AES58811.1| DNA polymerase I family
            protein expressed [Medicago truncatula]
          Length = 2269

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
 Frame = +2

Query: 2    RIVLDKAEEARVAAFSAFKSLGLEVPLFSRPLLSMITDNPVAPGAWASSGE---GSTSNF 172
            +IVLDKAEEAR+AAFSAFKSLG +VP F+ P+ + +  N +     +SSG     ++ +F
Sbjct: 1342 KIVLDKAEEARIAAFSAFKSLGYDVPQFAPPISTAVC-NSIRKEVGSSSGSDTADTSHSF 1400

Query: 173  VGT---EFKEFPAKPDAEDRKMDADNAA-PQPEAKLKKVQEYGLEP-SRELESVTALRCT 337
            + T   +    PA    +D    +DN A    E K   V  + L      + S+  L  T
Sbjct: 1401 IDTNHIDNSNVPALEKEKDLIKSSDNGALVSVEGKSDSVMPHSLSTVPVVVPSINELSMT 1460

Query: 338  SGAEKL 355
            SG  K+
Sbjct: 1461 SGPAKI 1466


>gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/56 (55%), Positives = 39/56 (69%)
 Frame = +2

Query: 2    RIVLDKAEEARVAAFSAFKSLGLEVPLFSRPLLSMITDNPVAPGAWASSGEGSTSN 169
            +IVL++AE ARVAAFSAFKSLG++VP F+ PLL  I D P    +  S G G  S+
Sbjct: 1264 KIVLEEAEAARVAAFSAFKSLGVQVPQFTTPLLPTI-DEPPTRDSMVSVGRGQASD 1318