BLASTX nr result

ID: Coptis24_contig00026712 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026712
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265505.1| PREDICTED: lipoxygenase 6, choloroplastic [V...    93   3e-17
ref|XP_002514963.1| lipoxygenase, putative [Ricinus communis] gi...    90   2e-16
ref|XP_002314548.1| predicted protein [Populus trichocarpa] gi|2...    89   5e-16
ref|XP_002311724.1| predicted protein [Populus trichocarpa] gi|2...    82   3e-14
ref|XP_003531186.1| PREDICTED: lipoxygenase 6, choloroplastic-li...    81   8e-14

>ref|XP_002265505.1| PREDICTED: lipoxygenase 6, choloroplastic [Vitis vinifera]
           gi|297738375|emb|CBI27576.3| unnamed protein product
           [Vitis vinifera]
          Length = 920

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 62/123 (50%), Positives = 75/123 (60%)
 Frame = -3

Query: 378 LPSLAATLSSSEIRFNCFTDIDKLYNDSVLLRGGEIRKTCLGV*Y*PR**KSS*VLVKGY 199
           +PS+AATLSSS+I F CF+DIDKLYND VLL+  E +K    V +     K    + +  
Sbjct: 345 IPSIAATLSSSDIPFKCFSDIDKLYNDGVLLKDEEDQKMSGNV-FPSNMMKQVLSVGQKL 403

Query: 198 *STRSSSCFERQVFMVA*VRGNESARQTLAGVNPVNIEALKESQIISKLDLADYGPPVS* 19
                 +   R  F  A +R NE ARQTLAGVNPVNIE LK   I+SKLD A YGPP S 
Sbjct: 404 LKYEVPAIISRDRF--AWLRDNEFARQTLAGVNPVNIEILKGFPIVSKLDPAVYGPPESA 461

Query: 18  LQK 10
           + K
Sbjct: 462 ITK 464


>ref|XP_002514963.1| lipoxygenase, putative [Ricinus communis]
           gi|223546014|gb|EEF47517.1| lipoxygenase, putative
           [Ricinus communis]
          Length = 912

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 62/134 (46%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
 Frame = -3

Query: 378 LPSLAATLSSSEIRFNCFTDIDKLYNDSVLLRG----------GEIRKTCLGV*Y*PR** 229
           +P++AA LSSS+I F+CF+DIDKLYND +LL+           G + K  L V       
Sbjct: 339 IPTIAAALSSSDIPFSCFSDIDKLYNDGLLLKTEEHKVIHPVLGNVMKQVLSV------- 391

Query: 228 KSS*VLVKGY*STRSSSCFERQVFMVA*VRGNESARQTLAGVNPVNIEALKESQIISKLD 49
             S  L+K        +  +R  F  A +R NE ARQ LAGVNPVNIE +KE  I+SKLD
Sbjct: 392 --SERLLK----YEIPAIIKRDRF--AWLRDNEFARQALAGVNPVNIEVMKEFPILSKLD 443

Query: 48  LADYGPPVS*LQKN 7
            A YGPP S L K+
Sbjct: 444 PAVYGPPESALTKD 457


>ref|XP_002314548.1| predicted protein [Populus trichocarpa] gi|222863588|gb|EEF00719.1|
           predicted protein [Populus trichocarpa]
          Length = 825

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
 Frame = -3

Query: 378 LPSLAATLSSSEIRFNCFTDIDKLYNDSVLLRGGEIRKTC----LGV*Y*PR**KSS*VL 211
           +P+++ATLSSS+I F CF+DIDKLYND  +L+  E+ +      LG            VL
Sbjct: 250 IPAISATLSSSDIPFTCFSDIDKLYNDGFVLKSDELNEIAQNPFLGN-------LMKQVL 302

Query: 210 VKGY*STRSSSCFERQVFMVA*VRGNESARQTLAGVNPVNIEALKESQIISKLDLADYGP 31
             G    +  +    +    A +R +E ARQTLAGVNPVNIE LKE  I+SKLD A YGP
Sbjct: 303 SVGERLLKYETPIVIKRDRFAWLRDSEFARQTLAGVNPVNIEILKEFPILSKLDPAVYGP 362

Query: 30  PVS*LQK 10
           P S L K
Sbjct: 363 PESALTK 369


>ref|XP_002311724.1| predicted protein [Populus trichocarpa] gi|222851544|gb|EEE89091.1|
           predicted protein [Populus trichocarpa]
          Length = 924

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 58/130 (44%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
 Frame = -3

Query: 378 LPSLAATLSSSEIRFNCFTDIDKLYNDSVLLRGGEIRKTCLGV*Y*PR**KSS*VLVKGY 199
           +P++AATLSSS+I F CF+DIDKLYND  +L+  E+ +                    G 
Sbjct: 348 IPAIAATLSSSDIPFTCFSDIDKLYNDGFILKTEELSEIVQNP-------------FLGN 394

Query: 198 *STRSSSCFERQVFM----------VA*VRGNESARQTLAGVNPVNIEALK-ESQIISKL 52
              R  S  ER +             A +R +E ARQTLAGVNPVNIE LK E  I+SKL
Sbjct: 395 FMKRVLSVSERLLIYDIPAVIKRDRFAWLRDSEFARQTLAGVNPVNIEILKVEFPILSKL 454

Query: 51  DLADYGPPVS 22
           D A YGPP S
Sbjct: 455 DPAVYGPPES 464


>ref|XP_003531186.1| PREDICTED: lipoxygenase 6, choloroplastic-like [Glycine max]
          Length = 921

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 58/127 (45%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
 Frame = -3

Query: 378 LPSLAATLSSSEIRFNCFTDIDKLYNDSVLLRGGEIRKTCLGV*Y*PR**KSS*VLVKGY 199
           LPSLAATLSSS++ F CF+DIDKLY D V+LR  E +     +           V+ +  
Sbjct: 346 LPSLAATLSSSDVPFKCFSDIDKLYIDGVVLRDEEQKGVMENL-------LVGKVMKQVL 398

Query: 198 *STRSSSCFERQVFM----VA*VRGNESARQTLAGVNPVNIEALKESQIISKLDLADYGP 31
            +  S   +E    +       +R NE ARQTLAGVNPVNIE LKE  I SKLD + YGP
Sbjct: 399 SAGESLLKYEIPAVIKGDKFCWLRDNEFARQTLAGVNPVNIELLKEFPIRSKLDPSLYGP 458

Query: 30  PVS*LQK 10
             S + K
Sbjct: 459 SESAITK 465


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