BLASTX nr result
ID: Coptis24_contig00026705
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00026705
(320 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat... 101 7e-20
emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera] 101 7e-20
ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat... 99 3e-19
emb|CBI35204.3| unnamed protein product [Vitis vinifera] 99 3e-19
emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera] 99 3e-19
>ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 101 bits (251), Expect = 7e-20
Identities = 44/104 (42%), Positives = 75/104 (72%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+ING+CK N AA++++ +ME+ +C +P++ +++ ++D LCK+ +V +A N+F M+
Sbjct: 181 LINGLCKVGNTSAAIRLLRSMEQGNC-QPNVVVFSTLIDSLCKDRQVTEAFNIFSEMIT- 238
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVT 317
K I PN+VTYNSLIHG+C++ WK +L +EM+ ++ PDV T
Sbjct: 239 KGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282
Score = 84.3 bits (207), Expect = 9e-15
Identities = 42/105 (40%), Positives = 65/105 (61%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+++G C D A+KV TM +DC+ + YN +++ CK VD A+ LF+ M
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS-YNTLINGYCKIQSVDKAMYLFEEM-SR 378
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ + PN VTYN+LIHG+C +GR ++ +SLF EM+ PD+VT+
Sbjct: 379 QELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 423
Score = 68.6 bits (166), Expect = 5e-10
Identities = 36/101 (35%), Positives = 58/101 (57%)
Frame = +3
Query: 18 ICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDDKRIF 197
+CK + D A+ ++ +E + PD++IY ILD +C+ ++DA +LF + K +
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNW-DPDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQ 487
Query: 198 PNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
PNV TYN +IHG+C+ G E LF EM +P+ T+
Sbjct: 488 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY 528
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/106 (31%), Positives = 56/106 (52%)
Frame = +3
Query: 3 VMINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVD 182
++IN +C D A ++ + K +PD + ++ LC E ++ +AL+LF M+
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168
Query: 183 DKRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ PNVVTY +LI+G+C++G + L M P+VV F
Sbjct: 169 EG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVF 213
Score = 55.8 bits (133), Expect = 4e-06
Identities = 32/105 (30%), Positives = 57/105 (54%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+I+G+CK +M+ M + I PD+ N ++D LCKE V +A ++ +M+
Sbjct: 251 LIHGLCKLCEWKHVTTLMNEMV-DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH- 308
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ + PNVVTYN+L+ G C + +FD M+ +V+++
Sbjct: 309 RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISY 353
>emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 101 bits (251), Expect = 7e-20
Identities = 44/104 (42%), Positives = 75/104 (72%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+ING+CK N AA++++ +ME+ +C +P++ +++ ++D LCK+ +V +A N+F M+
Sbjct: 181 LINGLCKVGNTSAAIRLLRSMEQGNC-QPNVVVFSTLIDSLCKDRQVTEAFNIFSEMIT- 238
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVT 317
K I PN+VTYNSLIHG+C++ WK +L +EM+ ++ PDV T
Sbjct: 239 KGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282
Score = 84.3 bits (207), Expect = 9e-15
Identities = 42/105 (40%), Positives = 65/105 (61%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+++G C D A+KV TM +DC+ + YN +++ CK VD A+ LF+ M
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS-YNTLINGYCKIQSVDKAMYLFEEM-SR 378
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ + PN VTYN+LIHG+C +GR ++ +SLF EM+ PD+VT+
Sbjct: 379 QELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 423
Score = 68.6 bits (166), Expect = 5e-10
Identities = 36/101 (35%), Positives = 58/101 (57%)
Frame = +3
Query: 18 ICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDDKRIF 197
+CK + D A+ ++ +E + PD++IY ILD +C+ ++DA +LF + K +
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNW-DPDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQ 487
Query: 198 PNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
PNV TYN +IHG+C+ G E LF EM +P+ T+
Sbjct: 488 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY 528
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/106 (31%), Positives = 56/106 (52%)
Frame = +3
Query: 3 VMINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVD 182
++IN +C D A ++ + K +PD + ++ LC E ++ +AL+LF M+
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168
Query: 183 DKRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ PNVVTY +LI+G+C++G + L M P+VV F
Sbjct: 169 EG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVF 213
Score = 55.8 bits (133), Expect = 4e-06
Identities = 32/105 (30%), Positives = 57/105 (54%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+I+G+CK +M+ M + I PD+ N ++D LCKE V +A ++ +M+
Sbjct: 251 LIHGLCKLCEWKHVTTLMNEMV-DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH- 308
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ + PNVVTYN+L+ G C + +FD M+ +V+++
Sbjct: 309 RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISY 353
>ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 99.4 bits (246), Expect = 3e-19
Identities = 46/105 (43%), Positives = 73/105 (69%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+ING+CK N AA++++ +M +++C +P++ YN I+D LCK+ +V +A NLF MV
Sbjct: 172 LINGLCKVGNTSAAIRLLGSMVQKNC-QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT- 229
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
K I P++ TYNSLIH +C + WK +L +EM+ ++ PDVV+F
Sbjct: 230 KGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 274
Score = 74.3 bits (181), Expect = 1e-11
Identities = 38/105 (36%), Positives = 65/105 (61%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+++G C D A+KV TM + C+ P++ YN +++ CK R+D A+ LF M
Sbjct: 312 LMDGHCLLSEMDEAVKVFDTMVCKGCM-PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 370
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ I P+ VTY++LIHG+C + R ++ ++LF EM+ P++VT+
Sbjct: 371 ELI-PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTY 414
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/105 (33%), Positives = 60/105 (57%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+++ +CK A V+ M + ++P++ Y ++D C + +D+A+ +F MV
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRG-VEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC- 334
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
K PNV++YN+LI+G C+I R + M LF EM + PD VT+
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 379
>emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 99.4 bits (246), Expect = 3e-19
Identities = 46/105 (43%), Positives = 73/105 (69%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+ING+CK N AA++++ +M +++C +P++ YN I+D LCK+ +V +A NLF MV
Sbjct: 139 LINGLCKVGNTSAAIRLLGSMVQKNC-QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT- 196
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
K I P++ TYNSLIH +C + WK +L +EM+ ++ PDVV+F
Sbjct: 197 KGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 241
Score = 69.7 bits (169), Expect = 2e-10
Identities = 35/105 (33%), Positives = 59/105 (56%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+I+ +C +++ M + I PD+ +N ++D LCKE +V +A ++ M+
Sbjct: 209 LIHALCNLCEWKHVATLLNEMV-DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 267
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
PNV++YN+LI+G C+I R + M LF EM + PD VT+
Sbjct: 268 GGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 312
Score = 67.8 bits (164), Expect = 9e-10
Identities = 34/105 (32%), Positives = 61/105 (58%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+++ +CK A V+ M + P++ YN +++ CK R+D A+ LF M
Sbjct: 244 VVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 303
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ I P+ VTY++LIHG+C + R ++ ++LF EM+ P++VT+
Sbjct: 304 ELI-PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTY 347
>emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 99.4 bits (246), Expect = 3e-19
Identities = 46/105 (43%), Positives = 73/105 (69%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+ING+CK N AA++++ +M +++C +P++ YN I+D LCK+ +V +A NLF MV
Sbjct: 172 LINGLCKVGNTSAAIRLLGSMVQKNC-QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT- 229
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
K I P++ TYNSLIH +C + WK +L +EM+ ++ PDVV+F
Sbjct: 230 KGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 274
Score = 75.1 bits (183), Expect = 6e-12
Identities = 38/105 (36%), Positives = 66/105 (62%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+++ C +N D A+KV TM + C+ P++ YN +++ CK R+D A+ LF M
Sbjct: 366 LMDXXCCYLNMDEAVKVFDTMVCKGCM-PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 424
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ I P+ VTY++LIHG+C + R ++ ++LF EM+ P++VT+
Sbjct: 425 ELI-PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTY 468
Score = 67.4 bits (163), Expect = 1e-09
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 18/123 (14%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVM--- 176
+++G C D A+KV TM + C+ P++ YN +++ CK R+D A++ +M
Sbjct: 312 LMDGHCLLSEMDEAVKVFDTMVCKGCM-PNVISYNTLINGYCKIQRIDKAIHYTXLMDXX 370
Query: 177 -----VDD----------KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDV 311
+D+ K PNV++YN+LI+G C+I R + M LF EM + PD
Sbjct: 371 CCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDT 430
Query: 312 VTF 320
VT+
Sbjct: 431 VTY 433
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/105 (28%), Positives = 58/105 (55%)
Frame = +3
Query: 6 MINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVDD 185
+I+ +C +++ M + I PD+ +N ++D LCKE +V +A ++ M+
Sbjct: 242 LIHALCNLCEWKHVATLLNEMV-DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ- 299
Query: 186 KRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ + PNVVTY +L+ G C + E + +FD M+ P+V+++
Sbjct: 300 RGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISY 344
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/106 (27%), Positives = 55/106 (51%)
Frame = +3
Query: 3 VMINGICKTMNADAALKVMSTMEKEDCIKPDLKIYNMILDRLCKENRVDDALNLFKVMVD 182
++IN C A V++ + K +PD + ++ +C E ++ +AL+LF M+
Sbjct: 101 ILINSFCHLNRVGFAFSVLAKILKLGH-QPDTATFTTLIRGICVEGKIGEALHLFDKMIG 159
Query: 183 DKRIFPNVVTYNSLIHGVCRIGRWKEGMSLFDEMLGMRVAPDVVTF 320
+ P+VVTY +LI+G+C++G + L M+ P+V +
Sbjct: 160 EG-FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAY 204