BLASTX nr result
ID: Coptis24_contig00026678
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026678 (947 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30... 491 e-136 ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|... 490 e-136 ref|XP_002307595.1| f-box family protein [Populus trichocarpa] g... 481 e-134 ref|XP_002300832.1| f-box family protein [Populus trichocarpa] g... 480 e-133 ref|XP_003536597.1| PREDICTED: F-box/kelch-repeat protein SKIP30... 479 e-133 >ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Vitis vinifera] gi|359479635|ref|XP_003632310.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 2 [Vitis vinifera] gi|359479637|ref|XP_003632311.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 3 [Vitis vinifera] Length = 345 Score = 491 bits (1264), Expect = e-136 Identities = 233/315 (73%), Positives = 273/315 (86%) Frame = +3 Query: 3 LPDAVALQCLARVPFYAYPKLQLVCHSWREAIRSPELFRTRQELGASEELLCVSAFEPEN 182 LPDAVAL+CLA VPFY +P+L+LV SWR+AIR PELF+ RQE+G+SE+LLCV AF+PEN Sbjct: 8 LPDAVALRCLAWVPFYLHPRLELVSRSWRDAIRGPELFKARQEVGSSEDLLCVCAFDPEN 67 Query: 183 SWQLYNPVKDLWMTLPVLPSQIRRLAHFGVVSIAGKLFVLGGGSDAVDPLTGDNDGIFAT 362 WQLY+P KDLW++LPVLPS+IR LAHFG VS AGKLFVLGGGSDAVDPLTGD DG FAT Sbjct: 68 LWQLYDPRKDLWISLPVLPSRIRHLAHFGAVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 Query: 363 DEVWSYDPVLRCWAQRASMLVPRAMFACCVLDGKIIVAGGFTNFRKSISKAEIYDPEKDV 542 +EVWSYDP++R WA RA MLVPRAMFACCVLDGKI+VAGGFT+ RKSIS+AEIYDPEKD Sbjct: 128 NEVWSYDPIIRQWAPRAPMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEIYDPEKDA 187 Query: 543 WIALQDLLLTHNSACTGVVIGGKVHVLHKGLSTVQVLDTSVLRWAIEDYGWLQGPMAVVQ 722 W+++ DL THNSAC+GVV+ GKVHVLHKGL+TVQ+LD W +EDYGWLQGPMA+VQ Sbjct: 188 WVSIPDLHRTHNSACSGVVLDGKVHVLHKGLTTVQILDKVGPGWRVEDYGWLQGPMAIVQ 247 Query: 723 GELYVLSHGVIFKQDKEQRKRKMVTTASDFQTRIGFAMIGLGSELYMIGGVIGPGRWNVD 902 G LYV+SHG+IFKQ++E +KMV +AS+F+ RIGFAM GL E+Y+IGGVIGP RWN D Sbjct: 248 GALYVMSHGIIFKQERE--VKKMVVSASEFRRRIGFAMTGLRDEIYVIGGVIGPDRWNWD 305 Query: 903 IKPLFDVDVLTVRSE 947 IKPL DVDVLT+ SE Sbjct: 306 IKPLSDVDVLTIGSE 320 >ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|223535945|gb|EEF37604.1| Protein AFR, putative [Ricinus communis] Length = 345 Score = 490 bits (1262), Expect = e-136 Identities = 232/315 (73%), Positives = 272/315 (86%) Frame = +3 Query: 3 LPDAVALQCLARVPFYAYPKLQLVCHSWREAIRSPELFRTRQELGASEELLCVSAFEPEN 182 LPDA+A++C+ARVPFY +PKL+LV HSWR AIRSPELF+ RQE+G++E+LLCV AFEPEN Sbjct: 8 LPDAIAIRCIARVPFYLHPKLELVSHSWRSAIRSPELFKARQEVGSAEDLLCVCAFEPEN 67 Query: 183 SWQLYNPVKDLWMTLPVLPSQIRRLAHFGVVSIAGKLFVLGGGSDAVDPLTGDNDGIFAT 362 WQLY+P++DLW+TLPVLPS+IR LAHFGVVS AGKL+VLGGGSDAVDPLTGD DG FAT Sbjct: 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLYVLGGGSDAVDPLTGDQDGNFAT 127 Query: 363 DEVWSYDPVLRCWAQRASMLVPRAMFACCVLDGKIIVAGGFTNFRKSISKAEIYDPEKDV 542 +EVWSYDPV+R WA RASMLVPRAMFACCVL GKI+VAGGFT+ RKSIS+AE+YDPEKDV Sbjct: 128 NEVWSYDPVIRQWALRASMLVPRAMFACCVLKGKIVVAGGFTSCRKSISQAEMYDPEKDV 187 Query: 543 WIALQDLLLTHNSACTGVVIGGKVHVLHKGLSTVQVLDTSVLRWAIEDYGWLQGPMAVVQ 722 WI + DL THNSAC+G+VIGGKVH+LHKGLS VQVLD W +EDY WLQGPMAVV Sbjct: 188 WIPIPDLHRTHNSACSGIVIGGKVHILHKGLSAVQVLDNVGAGWTVEDYNWLQGPMAVVH 247 Query: 723 GELYVLSHGVIFKQDKEQRKRKMVTTASDFQTRIGFAMIGLGSELYMIGGVIGPGRWNVD 902 G LYV+SHG+I KQ E + RK+V +AS+F+ RIGFAM GLG ++Y+IGGVIGP RWN D Sbjct: 248 GALYVMSHGLICKQ--EGKVRKVVVSASEFRRRIGFAMTGLGDDIYVIGGVIGPDRWNWD 305 Query: 903 IKPLFDVDVLTVRSE 947 IKP+ DVD+L V E Sbjct: 306 IKPMSDVDILAVGGE 320 >ref|XP_002307595.1| f-box family protein [Populus trichocarpa] gi|118482816|gb|ABK93324.1| unknown [Populus trichocarpa] gi|222857044|gb|EEE94591.1| f-box family protein [Populus trichocarpa] Length = 345 Score = 481 bits (1239), Expect = e-134 Identities = 229/312 (73%), Positives = 270/312 (86%) Frame = +3 Query: 3 LPDAVALQCLARVPFYAYPKLQLVCHSWREAIRSPELFRTRQELGASEELLCVSAFEPEN 182 LPDAVA++C+ARVPFY +PKL+LV SWR +RSPELF+ RQE+G++E+LLCV AF+PEN Sbjct: 8 LPDAVAIRCIARVPFYLHPKLELVSRSWRAVVRSPELFKARQEVGSAEDLLCVCAFDPEN 67 Query: 183 SWQLYNPVKDLWMTLPVLPSQIRRLAHFGVVSIAGKLFVLGGGSDAVDPLTGDNDGIFAT 362 WQLY+P +DLW+TLPVLPS+IR LAHFGVVS AGKLFVLGGGSDAVDPLTGD DG FAT Sbjct: 68 LWQLYDPHRDLWITLPVLPSKIRHLAHFGVVSSAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 Query: 363 DEVWSYDPVLRCWAQRASMLVPRAMFACCVLDGKIIVAGGFTNFRKSISKAEIYDPEKDV 542 +EVWSYDPVLR WA RASMLVPRAMFAC L+GKI+VAGGFT+ RKSIS+AE+YDPEKDV Sbjct: 128 NEVWSYDPVLRQWAARASMLVPRAMFACGTLNGKIVVAGGFTSCRKSISQAEMYDPEKDV 187 Query: 543 WIALQDLLLTHNSACTGVVIGGKVHVLHKGLSTVQVLDTSVLRWAIEDYGWLQGPMAVVQ 722 WI + DL THNS C+GVVIGGK+HVLH+GLSTVQVLD W +EDYGWLQGPMAVV Sbjct: 188 WIPIPDLHRTHNSTCSGVVIGGKLHVLHRGLSTVQVLDNVGSGWTVEDYGWLQGPMAVVH 247 Query: 723 GELYVLSHGVIFKQDKEQRKRKMVTTASDFQTRIGFAMIGLGSELYMIGGVIGPGRWNVD 902 LYV+SHG+IFKQ E + RK+V +AS+F+ RIGFAM+GLG ++Y+IGGVIGP RWN D Sbjct: 248 DALYVMSHGLIFKQ--EGKTRKVVVSASEFRKRIGFAMMGLGDDIYVIGGVIGPDRWNWD 305 Query: 903 IKPLFDVDVLTV 938 I+P+ DVD+LTV Sbjct: 306 IRPMSDVDILTV 317 >ref|XP_002300832.1| f-box family protein [Populus trichocarpa] gi|222842558|gb|EEE80105.1| f-box family protein [Populus trichocarpa] Length = 345 Score = 480 bits (1236), Expect = e-133 Identities = 227/315 (72%), Positives = 272/315 (86%) Frame = +3 Query: 3 LPDAVALQCLARVPFYAYPKLQLVCHSWREAIRSPELFRTRQELGASEELLCVSAFEPEN 182 LPDAVA++C+ARVPFY +PKL++V SW+ A+RS ELF+ RQE+G++E+LLCV AF+PEN Sbjct: 8 LPDAVAIRCIARVPFYLHPKLEVVSRSWQAAVRSTELFKARQEVGSAEDLLCVCAFDPEN 67 Query: 183 SWQLYNPVKDLWMTLPVLPSQIRRLAHFGVVSIAGKLFVLGGGSDAVDPLTGDNDGIFAT 362 WQLY+P++DLW+TLP+LPS+IR LAHFGVV AGKLFVLGGGSDAVDPLTGD DG FAT Sbjct: 68 LWQLYDPLRDLWITLPILPSKIRHLAHFGVVCSAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 Query: 363 DEVWSYDPVLRCWAQRASMLVPRAMFACCVLDGKIIVAGGFTNFRKSISKAEIYDPEKDV 542 +EVWSYDPVLR WA RASMLVPRAMFACC L+GKI+VAGGFT+ +KSIS+AE+YDPEKDV Sbjct: 128 NEVWSYDPVLREWAARASMLVPRAMFACCALNGKIVVAGGFTSCQKSISQAEMYDPEKDV 187 Query: 543 WIALQDLLLTHNSACTGVVIGGKVHVLHKGLSTVQVLDTSVLRWAIEDYGWLQGPMAVVQ 722 W+ + DL THNSAC+GVVIGGK+HVLH+GLSTVQVLD+ W +EDYGWLQGPMAVV Sbjct: 188 WVPIPDLHRTHNSACSGVVIGGKLHVLHRGLSTVQVLDSIGSGWTVEDYGWLQGPMAVVH 247 Query: 723 GELYVLSHGVIFKQDKEQRKRKMVTTASDFQTRIGFAMIGLGSELYMIGGVIGPGRWNVD 902 LYV+SHG+I KQ E + RK+V +AS+F+ RIGFAM GLG E+Y+IGGVIGP RWN D Sbjct: 248 DALYVMSHGLIVKQ--EGKTRKVVVSASEFRKRIGFAMTGLGDEMYVIGGVIGPDRWNWD 305 Query: 903 IKPLFDVDVLTVRSE 947 IKP+ DVD+LTV E Sbjct: 306 IKPVSDVDILTVGGE 320 >ref|XP_003536597.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Glycine max] gi|356536141|ref|XP_003536598.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 2 [Glycine max] gi|356536143|ref|XP_003536599.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 3 [Glycine max] Length = 344 Score = 479 bits (1233), Expect = e-133 Identities = 229/315 (72%), Positives = 272/315 (86%) Frame = +3 Query: 3 LPDAVALQCLARVPFYAYPKLQLVCHSWREAIRSPELFRTRQELGASEELLCVSAFEPEN 182 LPDAVA++CLA VPFY +PKL+LV +WR +R PELF+ RQELG+SE+LLCV AFEPEN Sbjct: 8 LPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCVCAFEPEN 67 Query: 183 SWQLYNPVKDLWMTLPVLPSQIRRLAHFGVVSIAGKLFVLGGGSDAVDPLTGDNDGIFAT 362 WQLY+P +DLW+TLPVLPS+IR L+HFG VS AGKLFV+GGGSDAVDPLTGD DG FAT Sbjct: 68 LWQLYDPQRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFAT 127 Query: 363 DEVWSYDPVLRCWAQRASMLVPRAMFACCVLDGKIIVAGGFTNFRKSISKAEIYDPEKDV 542 +EVWSYDPV+R W+ RA+MLVPR+MFACCV++GKI+VAGGFT+ RKSIS+AEIYDPEKDV Sbjct: 128 NEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEIYDPEKDV 187 Query: 543 WIALQDLLLTHNSACTGVVIGGKVHVLHKGLSTVQVLDTSVLRWAIEDYGWLQGPMAVVQ 722 WI + DL THNSAC+GVVIGGKVHVLHK +STVQVLD + +W +E+YGWL G MAV++ Sbjct: 188 WIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAG-QWTVEEYGWLHGQMAVIR 246 Query: 723 GELYVLSHGVIFKQDKEQRKRKMVTTASDFQTRIGFAMIGLGSELYMIGGVIGPGRWNVD 902 LYV+SHG+I KQDK + RK+V +AS+F+ RIGFAMIGLG ELY+IGGVIGP RWN D Sbjct: 247 DALYVISHGLIIKQDK--KMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPDRWNWD 304 Query: 903 IKPLFDVDVLTVRSE 947 IKPL DVDVLT+ SE Sbjct: 305 IKPLSDVDVLTLASE 319