BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026670
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    60   2e-07
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    55   8e-06

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/89 (35%), Positives = 48/89 (53%)
 Frame = +1

Query: 79  LAWNCHGVGLDSTIRCLRDHFPLEKP*FIFLCETKANENKSIRQIRSLGSYKSFVVASRG 258
           L+WNC GVG   T+R LR+   L  P  IFLCETK   N     +  LG +    V   G
Sbjct: 4   LSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPIG 63

Query: 259 LAVGLWCLWEENVDLHIIWSDSWILHATI 345
            + GL  +W+++V + ++ SD  ++ A +
Sbjct: 64  KSGGLALMWKDSVQIKVLQSDKRLIDALL 92


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/78 (38%), Positives = 39/78 (50%)
 Frame = +1

Query: 79  LAWNCHGVGLDSTIRCLRDHFPLEKP*FIFLCETKANENKSIRQIRSLGSYKSFVVASRG 258
           L WNC GVG   T+R LR       P  +FL ET  N+ +S      LG   +F V+SRG
Sbjct: 4   LCWNCRGVGNPRTVRQLRKWSTFYAPDIMFLSETMINKTESEALKSRLGFANAFGVSSRG 63

Query: 259 LAVGLWCLWEENVDLHII 312
            A GL   W E +   ++
Sbjct: 64  RAGGLCVFWREELSFSLV 81