BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026658
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vi...   152   2e-35
emb|CBI16435.3| unnamed protein product [Vitis vinifera]              152   2e-35
ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal...   151   6e-35
ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, puta...   150   8e-35
ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago trun...   150   1e-34

>ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera]
          Length = 656

 Score =  152 bits (385), Expect = 2e-35
 Identities = 73/77 (94%), Positives = 76/77 (98%)
 Frame = -3

Query: 381 LTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFEGH 202
           LTSQQIVRI QLFRQAKFDDPSGDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFEGH
Sbjct: 382 LTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 441

Query: 201 PFIVEAGVSLGGKDVKQ 151
           PF+VEAGVS+GGKDVKQ
Sbjct: 442 PFMVEAGVSIGGKDVKQ 458


>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  152 bits (385), Expect = 2e-35
 Identities = 73/77 (94%), Positives = 76/77 (98%)
 Frame = -3

Query: 381 LTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFEGH 202
           LTSQQIVRI QLFRQAKFDDPSGDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFEGH
Sbjct: 382 LTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 441

Query: 201 PFIVEAGVSLGGKDVKQ 151
           PF+VEAGVS+GGKDVKQ
Sbjct: 442 PFMVEAGVSIGGKDVKQ 458


>ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
           gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA
           topoisomerase 6 subunit B; Short=AtTOP6B; AltName:
           Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName:
           Full=Protein ELONGATED HYPOCOTYL 6; AltName:
           Full=Protein ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1|
           topoisomerase 6 subunit B [Arabidopsis thaliana]
           gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit
           B [Arabidopsis thaliana]
          Length = 670

 Score =  151 bits (381), Expect = 6e-35
 Identities = 72/77 (93%), Positives = 76/77 (98%)
 Frame = -3

Query: 381 LTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFEGH 202
           +TSQQ+VRI QLFRQAKFDDPSGDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFEGH
Sbjct: 378 VTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 437

Query: 201 PFIVEAGVSLGGKDVKQ 151
           PFIVEAGVSLGG+DVKQ
Sbjct: 438 PFIVEAGVSLGGRDVKQ 454


>ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis]
           gi|223547352|gb|EEF48847.1| Type II DNA topoisomerase VI
           subunit B, putative [Ricinus communis]
          Length = 656

 Score =  150 bits (380), Expect = 8e-35
 Identities = 72/77 (93%), Positives = 75/77 (97%)
 Frame = -3

Query: 381 LTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFEGH 202
           LT QQIVRI QLFRQAKFDDP+GDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFEGH
Sbjct: 382 LTDQQIVRIHQLFRQAKFDDPAGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 441

Query: 201 PFIVEAGVSLGGKDVKQ 151
           PFIVEAGVS+GGKDVKQ
Sbjct: 442 PFIVEAGVSVGGKDVKQ 458


>ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
           gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit
           B [Medicago truncatula]
          Length = 671

 Score =  150 bits (378), Expect = 1e-34
 Identities = 72/77 (93%), Positives = 75/77 (97%)
 Frame = -3

Query: 381 LTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFEGH 202
           LTSQQ+VRI QLFRQAKFDDPSG CLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFEGH
Sbjct: 380 LTSQQLVRIHQLFRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGH 439

Query: 201 PFIVEAGVSLGGKDVKQ 151
           PFIVEAGVS+GGKDVKQ
Sbjct: 440 PFIVEAGVSVGGKDVKQ 456