BLASTX nr result
ID: Coptis24_contig00026635
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026635 (380 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002281726.1| PREDICTED: double-strand break repair protei... 55 5e-15 gb|EEE61764.1| hypothetical protein OsJ_16317 [Oryza sativa Japo... 56 2e-09 gb|EEC78093.1| hypothetical protein OsI_17582 [Oryza sativa Indi... 56 2e-09 ref|XP_002330391.1| predicted protein [Populus trichocarpa] gi|2... 47 9e-09 gb|AAX24126.1| putative MRE11 [Oryza sativa] 51 6e-08 >ref|XP_002281726.1| PREDICTED: double-strand break repair protein MRE11 [Vitis vinifera] gi|302143084|emb|CBI20379.3| unnamed protein product [Vitis vinifera] Length = 731 Score = 55.5 bits (132), Expect(2) = 5e-15 Identities = 29/50 (58%), Positives = 36/50 (72%) Frame = +1 Query: 1 DTVAFAEEDLILKVEECMQERVKERSSLSKEGTSFLSLSQSLLDARGKTT 150 D + F EEDLILKV EC++ERVKERS SKE F+S ++SL + R K T Sbjct: 484 DPLKFEEEDLILKVGECLEERVKERSVHSKETPQFMSSARSLENIRSKGT 533 Score = 50.1 bits (118), Expect(2) = 5e-15 Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 1/46 (2%) Frame = +2 Query: 245 GISNSFSDDDESAQLVASSTA-RGRKVSSAAFRSSHEASEIGKSKT 379 G + SFSDD++ QL S +A RGRK SSA F+SSH+ASE GK K+ Sbjct: 537 GSAVSFSDDEDPTQLSGSKSATRGRKGSSATFKSSHDASEQGKGKS 582 >gb|EEE61764.1| hypothetical protein OsJ_16317 [Oryza sativa Japonica Group] Length = 686 Score = 55.8 bits (133), Expect(2) = 2e-09 Identities = 28/49 (57%), Positives = 35/49 (71%) Frame = +1 Query: 1 DTVAFAEEDLILKVEECMQERVKERSSLSKEGTSFLSLSQSLLDARGKT 147 D EED+I+KV ECMQERVKERS SKE + F S SQ+L+D G++ Sbjct: 461 DKFKIEEEDIIVKVGECMQERVKERSLRSKEDSRFTSSSQNLVDTGGRS 509 Score = 30.8 bits (68), Expect(2) = 2e-09 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = +2 Query: 254 NSFSDDDESAQLV--ASSTARGRKVSSAAFRSSHEASEIGKSKT 379 NSFSDD+++ +++ A +T GRK S R S +A+++ K+ T Sbjct: 517 NSFSDDEDTREMLLGARTTNAGRKASGFT-RPSKDATDVAKTGT 559 >gb|EEC78093.1| hypothetical protein OsI_17582 [Oryza sativa Indica Group] Length = 686 Score = 55.8 bits (133), Expect(2) = 2e-09 Identities = 28/49 (57%), Positives = 35/49 (71%) Frame = +1 Query: 1 DTVAFAEEDLILKVEECMQERVKERSSLSKEGTSFLSLSQSLLDARGKT 147 D EED+I+KV ECMQERVKERS SKE + F S SQ+L+D G++ Sbjct: 461 DKFKIEEEDIIVKVGECMQERVKERSLRSKEDSRFTSSSQNLVDTGGRS 509 Score = 30.8 bits (68), Expect(2) = 2e-09 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = +2 Query: 254 NSFSDDDESAQLV--ASSTARGRKVSSAAFRSSHEASEIGKSKT 379 NSFSDD+++ +++ A +T GRK S R S +A+++ K+ T Sbjct: 517 NSFSDDEDTREMLLGARTTNAGRKASGFT-RPSKDATDVAKTGT 559 >ref|XP_002330391.1| predicted protein [Populus trichocarpa] gi|222871776|gb|EEF08907.1| predicted protein [Populus trichocarpa] Length = 772 Score = 47.0 bits (110), Expect(2) = 9e-09 Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Frame = +2 Query: 245 GISNSFSDDDESAQLVAS-STARGRKVSSAAFRSSHEASEIGKSKT 379 G + SFSD++++AQ+ S ST RGRK S RSSH+ SE GK KT Sbjct: 530 GSAVSFSDEEDAAQISGSTSTTRGRKGSRVGSRSSHDVSETGKGKT 575 Score = 37.4 bits (85), Expect(2) = 9e-09 Identities = 23/46 (50%), Positives = 28/46 (60%) Frame = +1 Query: 1 DTVAFAEEDLILKVEECMQERVKERSSLSKEGTSFLSLSQSLLDAR 138 DT+ F +EDLILK ERVKERS S + F S +QS+ D R Sbjct: 484 DTMKFEDEDLILK------ERVKERSVHSTDAAQFTSGAQSMEDFR 523 >gb|AAX24126.1| putative MRE11 [Oryza sativa] Length = 706 Score = 50.8 bits (120), Expect(2) = 6e-08 Identities = 28/49 (57%), Positives = 34/49 (69%) Frame = +1 Query: 1 DTVAFAEEDLILKVEECMQERVKERSSLSKEGTSFLSLSQSLLDARGKT 147 D EED+I+KV ECMQERVKERS SKE + F S SQ+ LD G++ Sbjct: 482 DKFKIEEEDIIVKVGECMQERVKERSLRSKEDSRFTSSSQN-LDTGGRS 529 Score = 30.8 bits (68), Expect(2) = 6e-08 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = +2 Query: 254 NSFSDDDESAQLV--ASSTARGRKVSSAAFRSSHEASEIGKSKT 379 NSFSDD+++ +++ A +T GRK S R S +A+++ K+ T Sbjct: 537 NSFSDDEDTREMLLGARTTNAGRKASGFT-RPSKDATDVAKTGT 579