BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026629
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    62   4e-08
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    62   6e-08
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    60   2e-07
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    58   7e-07
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    57   2e-06

>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
 Frame = +3

Query: 87  SYCTKSCRYSLPQVMQMQLVH---------DVLEERKRKESFMIYVKWFAPCEGWVKYNT 239
           S C    ++    V +++  H         DVL ER         + W  P EGWV  NT
Sbjct: 469 SRCRDRVKFLKSAVAEVEAAHLAANGDAREDVLVERM--------IAWRKPAEGWVTMNT 520

Query: 240 DGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVVLYGLQLIMKTSYKRI 419
           DGAS+GN G A AG ++   +G++L+G  + I   +  + E   V YGL +  +  ++R+
Sbjct: 521 DGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRV 580

Query: 420 EVD 428
            ++
Sbjct: 581 RLE 583


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 33/78 (42%), Positives = 44/78 (56%)
 Frame = +3

Query: 195 VKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVV 374
           V W  P EGW+K NTDGAS GN G A AG IL   +G+++ G  V I   +  + E   V
Sbjct: 624 VSWVKPAEGWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRV 683

Query: 375 LYGLQLIMKTSYKRIEVD 428
            YGL +  +    R+EV+
Sbjct: 684 YYGLYIAWERKITRLEVE 701


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/78 (41%), Positives = 44/78 (56%)
 Frame = +3

Query: 195 VKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVV 374
           V W +P +GWVK NTDGAS GN G A AG +L   NG ++ G  V I   +  + E   V
Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210

Query: 375 LYGLQLIMKTSYKRIEVD 428
            YGL +      +R+E++
Sbjct: 211 YYGLFIAWGRGARRVELE 228


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/86 (39%), Positives = 45/86 (52%)
 Frame = +3

Query: 168  KRKESFMIYVKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDAT 347
            +RKE   I V+W  P EGWVK NTDGAS GN G A  G ++ G  G       +     T
Sbjct: 1201 RRKE---ILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGEIHEVFAINCGSCT 1257

Query: 348  NNVVEFLVVLYGLQLIMKTSYKRIEV 425
                E L VL GL +  + ++K++ V
Sbjct: 1258 CTKAELLAVLRGLMIAWEGNHKQVIV 1283


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/78 (35%), Positives = 40/78 (51%)
 Frame = +3

Query: 195  VKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVV 374
            ++W  P +GWVK  TDGAS GN G A AG  +    G +L G  + I      + E    
Sbjct: 1061 IRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGA 1120

Query: 375  LYGLQLIMKTSYKRIEVD 428
             YGL +     ++R+E+D
Sbjct: 1121 YYGLLIAWDKGFRRVELD 1138