BLASTX nr result
ID: Coptis24_contig00026629
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026629 (428 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 62 4e-08 gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 62 6e-08 gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 60 2e-07 emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 58 7e-07 gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 57 2e-06 >dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis thaliana] Length = 676 Score = 62.4 bits (150), Expect = 4e-08 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Frame = +3 Query: 87 SYCTKSCRYSLPQVMQMQLVH---------DVLEERKRKESFMIYVKWFAPCEGWVKYNT 239 S C ++ V +++ H DVL ER + W P EGWV NT Sbjct: 469 SRCRDRVKFLKSAVAEVEAAHLAANGDAREDVLVERM--------IAWRKPAEGWVTMNT 520 Query: 240 DGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVVLYGLQLIMKTSYKRI 419 DGAS+GN G A AG ++ +G++L+G + I + + E V YGL + + ++R+ Sbjct: 521 DGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRV 580 Query: 420 EVD 428 ++ Sbjct: 581 RLE 583 >gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis] Length = 799 Score = 61.6 bits (148), Expect = 6e-08 Identities = 33/78 (42%), Positives = 44/78 (56%) Frame = +3 Query: 195 VKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVV 374 V W P EGW+K NTDGAS GN G A AG IL +G+++ G V I + + E V Sbjct: 624 VSWVKPAEGWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRV 683 Query: 375 LYGLQLIMKTSYKRIEVD 428 YGL + + R+EV+ Sbjct: 684 YYGLYIAWERKITRLEVE 701 >gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 321 Score = 60.1 bits (144), Expect = 2e-07 Identities = 32/78 (41%), Positives = 44/78 (56%) Frame = +3 Query: 195 VKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVV 374 V W +P +GWVK NTDGAS GN G A AG +L NG ++ G V I + + E V Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210 Query: 375 LYGLQLIMKTSYKRIEVD 428 YGL + +R+E++ Sbjct: 211 YYGLFIAWGRGARRVELE 228 >emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1378 Score = 58.2 bits (139), Expect = 7e-07 Identities = 34/86 (39%), Positives = 45/86 (52%) Frame = +3 Query: 168 KRKESFMIYVKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDAT 347 +RKE I V+W P EGWVK NTDGAS GN G A G ++ G G + T Sbjct: 1201 RRKE---ILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGEIHEVFAINCGSCT 1257 Query: 348 NNVVEFLVVLYGLQLIMKTSYKRIEV 425 E L VL GL + + ++K++ V Sbjct: 1258 CTKAELLAVLRGLMIAWEGNHKQVIV 1283 >gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1231 Score = 57.0 bits (136), Expect = 2e-06 Identities = 28/78 (35%), Positives = 40/78 (51%) Frame = +3 Query: 195 VKWFAPCEGWVKYNTDGASYGNAGHAEAGCILGGSNGNFLLGVVVPILDATNNVVEFLVV 374 ++W P +GWVK TDGAS GN G A AG + G +L G + I + E Sbjct: 1061 IRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGA 1120 Query: 375 LYGLQLIMKTSYKRIEVD 428 YGL + ++R+E+D Sbjct: 1121 YYGLLIAWDKGFRRVELD 1138