BLASTX nr result

ID: Coptis24_contig00026617 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026617
         (659 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002336036.1| predicted protein [Populus trichocarpa] gi|2...   134   2e-29
ref|XP_002281286.1| PREDICTED: blue copper protein [Vitis vinife...   133   3e-29
ref|XP_002297929.1| predicted protein [Populus trichocarpa] gi|2...   127   1e-27
ref|XP_002334696.1| predicted protein [Populus trichocarpa] gi|2...   127   2e-27
gb|AAR13691.1| Cu2+ plastocyanin-like protein [Brassica oleracea]     120   3e-25

>ref|XP_002336036.1| predicted protein [Populus trichocarpa] gi|222839538|gb|EEE77875.1|
           predicted protein [Populus trichocarpa]
          Length = 183

 Score =  134 bits (337), Expect = 2e-29
 Identities = 65/126 (51%), Positives = 80/126 (63%)
 Frame = +3

Query: 12  LLFYILIGLGLVLTCRATTYTVXXXXXXXXXXXXXXXXXXXXFKAGDALLFQYSSIHSVD 191
           +L + L+ LGL +TC+A TY V                    F  GD L+FQYSS HSVD
Sbjct: 5   VLVFSLVVLGLAVTCKAATYMVGDNSGWDISTDIDTWAQDKTFAVGDVLMFQYSSSHSVD 64

Query: 192 EVTKEDFNGCNVTNPLSSSNSGNTTIALSAPGERYFTCGNGLHCLGGMKVKVNVQGGPAN 371
           EV KEDF+ CN TN L +  +GNTT++L+ PG RYF CGN LHCLGGMK++VNV    A+
Sbjct: 65  EVKKEDFDSCNTTNVLRTFTTGNTTVSLTNPGTRYFVCGNKLHCLGGMKLQVNVASNQAD 124

Query: 372 SPTSAP 389
           SPT AP
Sbjct: 125 SPTGAP 130


>ref|XP_002281286.1| PREDICTED: blue copper protein [Vitis vinifera]
           gi|297744981|emb|CBI38573.3| unnamed protein product
           [Vitis vinifera]
          Length = 182

 Score =  133 bits (335), Expect = 3e-29
 Identities = 77/171 (45%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
 Frame = +3

Query: 24  ILIGLGLVLTCRATT-YTVXXXXXXXXXXXXXXXXXXXXFKAGDALLFQYSSIHSVDEVT 200
           +L+ LG  LTC A T YTV                    F  GD LLFQYSS +SV+EVT
Sbjct: 10  VLVVLGFALTCSAATFYTVGDSSGWDISTDLDTWAKDKKFIVGDVLLFQYSSSNSVNEVT 69

Query: 201 KEDFNGCNVTNPLSSSNSGNTTIALSAPGERYFTCGNGLHCLGGMKVKVNVQGGPANSPT 380
           +E F GCN+T+ L +S++GNT+I L+ PGERYF CGN LHCLGGMK++VNVQ  PA SP 
Sbjct: 70  EESFKGCNMTDTLQTSSNGNTSIPLNRPGERYFVCGNKLHCLGGMKLQVNVQKDPAASPA 129

Query: 381 SAP-LSPGT--XXXXXXXXXXXXXXXXKGFIHGGWASLLACVAVSISLFIF 524
            AP  S G+                   GFI+GG  SLL+    S++  ++
Sbjct: 130 GAPEASEGSLPRPSSKNNNPAAAIPDSTGFINGGMVSLLSAFLGSMATLLW 180


>ref|XP_002297929.1| predicted protein [Populus trichocarpa] gi|222845187|gb|EEE82734.1|
           predicted protein [Populus trichocarpa]
          Length = 184

 Score =  127 bits (320), Expect = 1e-27
 Identities = 66/130 (50%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
 Frame = +3

Query: 3   MVKL-LFYILIGLGLVLTCRATTYTVXXXXXXXXXXXXXXXXXXXXFKAGDALLFQYSSI 179
           M KL L Y L+ LGL LTC A TY V                    F  GD L FQYSS 
Sbjct: 1   MAKLVLVYSLVVLGLALTCNAATYMVGDNSGWDISTDLDTWAQSKTFVVGDLLSFQYSSS 60

Query: 180 HSVDEVTKEDFNGCNVTNPLSSSNSGNTTIALSAPGERYFTCGNGLHCLGGMKVKVNVQG 359
           HS++EV KEDF+ CN TN   +  +GNTT+ L+ PG RYF CGN LHCLGGMK++VNV+ 
Sbjct: 61  HSLEEVKKEDFDSCNTTNVARTFTNGNTTVPLTEPGTRYFVCGNQLHCLGGMKLQVNVED 120

Query: 360 GPANSPTSAP 389
             AN P  AP
Sbjct: 121 NQANPPIGAP 130


>ref|XP_002334696.1| predicted protein [Populus trichocarpa] gi|222874530|gb|EEF11661.1|
           predicted protein [Populus trichocarpa]
          Length = 174

 Score =  127 bits (318), Expect = 2e-27
 Identities = 62/118 (52%), Positives = 73/118 (61%)
 Frame = +3

Query: 36  LGLVLTCRATTYTVXXXXXXXXXXXXXXXXXXXXFKAGDALLFQYSSIHSVDEVTKEDFN 215
           L   LTC+A TY V                    F  GD L+FQYSS HSVDEV KEDF+
Sbjct: 4   LSNALTCKAATYMVGDNSGWDISTDIDTWAQDKTFAVGDVLMFQYSSSHSVDEVKKEDFD 63

Query: 216 GCNVTNPLSSSNSGNTTIALSAPGERYFTCGNGLHCLGGMKVKVNVQGGPANSPTSAP 389
            CN TN L +  +GNTT++L+ PG RYF CGN LHCLGGMK++VNV    A+SPT AP
Sbjct: 64  SCNTTNVLRTFTTGNTTVSLTNPGTRYFVCGNKLHCLGGMKLQVNVASNQADSPTGAP 121


>gb|AAR13691.1| Cu2+ plastocyanin-like protein [Brassica oleracea]
          Length = 195

 Score =  120 bits (300), Expect = 3e-25
 Identities = 57/130 (43%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
 Frame = +3

Query: 3   MVKLLFYILIGLGLVLTCRATTYTVXXXXXXXXXXXXXXXXXXXXFKAGDALLFQYSSIH 182
           M+ L +  +IG+ ++  C ATTY V                    F  GD L+FQYSS H
Sbjct: 7   MLFLFYLCIIGISVITRCNATTYFVGDTSGWDISSDLESWTLGKRFSVGDVLMFQYSSTH 66

Query: 183 SVDEVTKEDFNGCNVTNPLSSSNSGNTTIALSAPGERYFTCGNGLHCLGGMKVKVNVQG- 359
           SV EV K++F  CN T+P+ +  +GNTT+ALS PG+ +F CGN LHC  GM+++VNV+G 
Sbjct: 67  SVYEVAKDNFQSCNSTDPIRTFTNGNTTVALSKPGDGFFLCGNRLHCFAGMRLQVNVEGN 126

Query: 360 GPANSPTSAP 389
           GP+ +P  AP
Sbjct: 127 GPSLAPVGAP 136


Top