BLASTX nr result
ID: Coptis24_contig00026591
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00026591 (423 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 109 2e-22 gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 107 1e-21 gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 107 1e-21 gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 106 2e-21 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 105 5e-21 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 109 bits (273), Expect = 2e-22 Identities = 56/126 (44%), Positives = 76/126 (60%) Frame = +2 Query: 32 NFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFFREAYI 211 N L IP EI++ VFS+ ++S+ GPDGF CFY W+I+++D+ A FF +I Sbjct: 109 NHALTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWI 168 Query: 212 PMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSIEQAWF 391 N N LIPK NA Q+RPI M+NF KI+SKI+ RL I+ +VS EQ F Sbjct: 169 LPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGF 228 Query: 392 IHGRSV 409 I GR++ Sbjct: 229 IQGRNI 234 >gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 977 Score = 107 bits (266), Expect = 1e-21 Identities = 53/135 (39%), Positives = 81/135 (60%) Frame = +2 Query: 17 ITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFF 196 + EED ML + EI++VVFSM + SLGPDG++ FY A W+II ++ A SFF Sbjct: 556 VAEEDKGMLTTEVTKEEIKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSFF 615 Query: 197 REAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSI 376 + ++P GVN+ ALIPK++ + YRPI N K++SKI+ RLK ++ ++ Sbjct: 616 EKGFLPKGVNSTILALIPKKLEEIEMKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAG 675 Query: 377 EQAWFIHGRSVHANI 421 Q+ F+ R + N+ Sbjct: 676 NQSAFVQDRLLLENL 690 >gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1229 Score = 107 bits (266), Expect = 1e-21 Identities = 52/139 (37%), Positives = 81/139 (58%) Frame = +2 Query: 5 ISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA* 184 I ++++ DN L IP + E++ VFS+ + + GPDGF FYH+ W+II D+ Sbjct: 307 IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREI 366 Query: 185 TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISK 364 FF P +N LIPK++ +K + YRPI + N F KI++KIM R++ I+ K Sbjct: 367 RLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPK 426 Query: 365 LVSIEQAWFIHGRSVHANI 421 L+S Q+ F+ GR + N+ Sbjct: 427 LISENQSAFVPGRVISDNV 445 >gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1216 Score = 106 bits (265), Expect = 2e-21 Identities = 54/134 (40%), Positives = 80/134 (59%) Frame = +2 Query: 20 TEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFFR 199 +E+D+ +L + EI+KV+FSM + S GPDG+ FY A W II D++ A SFF Sbjct: 163 SEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFA 222 Query: 200 EAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSIE 379 + ++P GVN+ ALIPK+ A++ YRPI N K +SKI+ RLK I+ K + Sbjct: 223 KGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGN 282 Query: 380 QAWFIHGRSVHANI 421 Q+ F+ R + N+ Sbjct: 283 QSAFVKDRLLIENV 296 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 105 bits (261), Expect = 5e-21 Identities = 49/135 (36%), Positives = 77/135 (57%) Frame = +2 Query: 5 ISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA* 184 I K++ N +L +P + E++ VF + S+ + GPD F CF+ WNI++ D+ A Sbjct: 161 IPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAV 220 Query: 185 TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISK 364 FF+ ++P N N LIPK NA QYR I + NF KI++K++ RL I+ Sbjct: 221 LDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPS 280 Query: 365 LVSIEQAWFIHGRSV 409 ++S EQ F+ GR++ Sbjct: 281 IISKEQRGFVQGRNI 295