BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026591
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   109   2e-22
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...   107   1e-21
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   107   1e-21
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   106   2e-21
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   105   5e-21

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  109 bits (273), Expect = 2e-22
 Identities = 56/126 (44%), Positives = 76/126 (60%)
 Frame = +2

Query: 32  NFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFFREAYI 211
           N  L  IP   EI++ VFS+ ++S+ GPDGF  CFY   W+I+++D+  A   FF   +I
Sbjct: 109 NHALTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWI 168

Query: 212 PMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSIEQAWF 391
               N N   LIPK  NA    Q+RPI M+NF  KI+SKI+  RL  I+  +VS EQ  F
Sbjct: 169 LPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGF 228

Query: 392 IHGRSV 409
           I GR++
Sbjct: 229 IQGRNI 234


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 977

 Score =  107 bits (266), Expect = 1e-21
 Identities = 53/135 (39%), Positives = 81/135 (60%)
 Frame = +2

Query: 17  ITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFF 196
           + EED  ML     + EI++VVFSM  + SLGPDG++  FY A W+II ++   A  SFF
Sbjct: 556 VAEEDKGMLTTEVTKEEIKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSFF 615

Query: 197 REAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSI 376
            + ++P GVN+   ALIPK++   +   YRPI   N   K++SKI+  RLK ++   ++ 
Sbjct: 616 EKGFLPKGVNSTILALIPKKLEEIEMKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAG 675

Query: 377 EQAWFIHGRSVHANI 421
            Q+ F+  R +  N+
Sbjct: 676 NQSAFVQDRLLLENL 690


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  107 bits (266), Expect = 1e-21
 Identities = 52/139 (37%), Positives = 81/139 (58%)
 Frame = +2

Query: 5   ISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA* 184
           I  ++++ DN  L  IP + E++  VFS+ +  + GPDGF   FYH+ W+II  D+    
Sbjct: 307 IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREI 366

Query: 185 TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISK 364
             FF     P  +N     LIPK++  +K + YRPI + N F KI++KIM  R++ I+ K
Sbjct: 367 RLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPK 426

Query: 365 LVSIEQAWFIHGRSVHANI 421
           L+S  Q+ F+ GR +  N+
Sbjct: 427 LISENQSAFVPGRVISDNV 445


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/134 (40%), Positives = 80/134 (59%)
 Frame = +2

Query: 20  TEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA*TSFFR 199
           +E+D+ +L  +    EI+KV+FSM  + S GPDG+   FY A W II D++  A  SFF 
Sbjct: 163 SEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFA 222

Query: 200 EAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISKLVSIE 379
           + ++P GVN+   ALIPK+  A++   YRPI   N   K +SKI+  RLK I+ K +   
Sbjct: 223 KGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGN 282

Query: 380 QAWFIHGRSVHANI 421
           Q+ F+  R +  N+
Sbjct: 283 QSAFVKDRLLIENV 296


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  105 bits (261), Expect = 5e-21
 Identities = 49/135 (36%), Positives = 77/135 (57%)
 Frame = +2

Query: 5   ISKVITEEDNFMLCAIPLEVEIQKVVFSMKSESSLGPDGFQGCFYHACWNIIRDDLCSA* 184
           I K++    N +L  +P + E++  VF + S+ + GPD F  CF+   WNI++ D+  A 
Sbjct: 161 IPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAV 220

Query: 185 TSFFREAYIPMGVNNNFFALIPKEINAKKASQYRPIYMSNFFMKILSKIMQTRLKTIISK 364
             FF+  ++P   N N   LIPK  NA    QYR I + NF  KI++K++  RL  I+  
Sbjct: 221 LDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPS 280

Query: 365 LVSIEQAWFIHGRSV 409
           ++S EQ  F+ GR++
Sbjct: 281 IISKEQRGFVQGRNI 295