BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026589
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    65   3e-11
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    65   3e-11
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...    60   3e-08
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...    60   3e-07
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...    59   7e-07

>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score = 64.7 bits (156), Expect(2) = 3e-11
 Identities = 30/69 (43%), Positives = 50/69 (72%)
 Frame = +1

Query: 418 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTFRGKVYARNLVKDMNS 597
           R V+ P      KLS LGKL + K  S++NKVV+QIG LG+QL+ +G+ Y+++L++D+ S
Sbjct: 695 RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 754

Query: 598 LFFVKFAAN 624
           LF  +++++
Sbjct: 755 LFHNRYSSD 763



 Score = 28.9 bits (63), Expect(2) = 3e-11
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 311 LQIFQLGVHDVSFLLHRLRCRCPELVELQLES 406
           LQ  Q  +  +S LL++LR    ELVELQLE+
Sbjct: 661 LQALQKNIQVLSPLLYQLRSTFNELVELQLEN 692


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score = 64.7 bits (156), Expect(2) = 3e-11
 Identities = 30/69 (43%), Positives = 50/69 (72%)
 Frame = +1

Query: 418 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTFRGKVYARNLVKDMNS 597
           R V+ P      KLS LGKL + K  S++NKVV+QIG LG+QL+ +G+ Y+++L++D+ S
Sbjct: 665 RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 724

Query: 598 LFFVKFAAN 624
           LF  +++++
Sbjct: 725 LFHNRYSSD 733



 Score = 28.9 bits (63), Expect(2) = 3e-11
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 311 LQIFQLGVHDVSFLLHRLRCRCPELVELQLES 406
           LQ  Q  +  +S LL++LR    ELVELQLE+
Sbjct: 631 LQALQKNIQVLSPLLYQLRSTFNELVELQLEN 662


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score = 60.1 bits (144), Expect(2) = 3e-08
 Identities = 32/70 (45%), Positives = 44/70 (62%)
 Frame = +1

Query: 418 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTFRGKVYARNLVKDMNS 597
           R  + PV+    K SG+G L++ K  S+ NKVV+QIG LG+Q++ RGK Y   LV DM  
Sbjct: 217 RNEKLPVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQ 276

Query: 598 LFFVKFAANG 627
           LF  K+ + G
Sbjct: 277 LFQKKYPSVG 286



 Score = 23.1 bits (48), Expect(2) = 3e-08
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 341 VSFLLHRLRCRCPELVELQLE 403
           +S LLH LR    E VE+QLE
Sbjct: 193 MSKLLHHLRSSYNESVEVQLE 213


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 47/69 (68%)
 Frame = +1

Query: 418 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTFRGKVYARNLVKDMNS 597
           RR + PV     +LS +G L+++K +S++ KVV+QIG LG+Q++ RGK Y + LV+DM  
Sbjct: 668 RRAKLPVADFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVEDMAL 727

Query: 598 LFFVKFAAN 624
            F  K+ ++
Sbjct: 728 HFESKYPSD 736


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/69 (44%), Positives = 47/69 (68%)
 Frame = +1

Query: 418 RRVEAPVVISFPKLSGLGKLMNFKCNSSVNKVVEQIGLLGIQLTFRGKVYARNLVKDMNS 597
           R V+ PV       S LG L++ K +++V KVV+QIG LG+Q++ RGK+Y++ LV+D+ S
Sbjct: 667 RDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLAS 726

Query: 598 LFFVKFAAN 624
            F  K+ AN
Sbjct: 727 HFLSKYPAN 735